Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9RP3	54139	2025-07-24	2025-06-23	2.1	3.06	2.15	2.7	0.003	0.66	0.0	0.04	15.01	0.01	2.465	8.52	0.72	1.3	98.7	0.0	1.56	0.79	0.82	4.11	2.7	0.003	0.57	0.0	0.04	15.68	0.00	2.552	8.29	0.72	1.6	98.4	0.0	1.57	3.27	0.78	0.81	3.30	6349	799	2	0	0	0	0	logfile
✔	9P6H	71309	2025-07-24	2025-06-19	2.75	3.35	2.79	3.2	0.007	1.01	0.0	0.06	23.35	0.02	2.215	11.68	0.32	4.6	95.3	0.1	-0.73	0.52	0.83	3.40	3.2	0.003	0.69	0.0	0.04	15.56	0.00	1.349	5.67	1.29	3.3	96.7	0.0	0.16	0.49	0.49	0.82	2.88	5963	701	7	0	21	0	0	logfile
✔	9oPV	70725	2025-07-24	2025-05-20	3.4	4.00	6.56	3.7	0.002	0.53	0.0	0.03	14.95	0.00	2.387	8.63	0.00	0.0	100.0	0.0	6.08	0.43	0.70	0.95	3.7	0.003	0.81	0.0	0.04	18.31	0.00	2.367	15.79	5.24	0.5	99.5	0.0	4.46	1.68	0.44	0.75	1.12	6145	780	10	0	0	0	0	logfile
✔	9oPB	70687	2025-07-24	2025-05-17	3.6	3.67	4.75	3.4	0.002	0.44	0.0	0.03	15.83	0.00	2.483	6.92	0.16	0.0	100.0	0.0	6.54	0.35	0.56	0.42	3.5	0.003	0.73	0.0	0.04	18.58	0.00	2.523	18.40	4.29	0.1	99.9	0.0	4.78	3.55	0.37	0.64	-0.05	6145	780	10	0	0	0	0	logfile
✔	9oMA	70610	2025-07-28	2025-05-13	4.14	3.78	—	2.0	0.005	0.73	0.0	0.04	14.12	0.01	2.293	7.98	2.01	5.5	94.1	0.4	-0.64	0.83	0.62	—	1.7	0.004	0.76	0.0	0.05	14.04	0.01	2.156	13.34	0.09	5.8	94.0	0.2	-0.71	1.36	0.83	0.65	—	10325	1270	5	0	0	0	0	logfile
✔	9UWD	64550	2025-07-23	2025-05-12	3.41	3.58	3.55	3.6	0.007	1.07	3.0	0.08	9.30	0.01	2.001	10.59	1.39	3.5	96.0	0.5	1.54	0.37	0.56	1.35	3.7	0.003	0.70	0.0	0.04	14.92	0.00	2.510	9.56	5.83	4.5	95.5	0.0	2.54	0.99	0.41	0.69	2.35	3355	428	1	0	0	0	0	logfile
✔	9UT8	64484	2025-07-30	2025-05-03	3.41	2.28	3.49	2.0	0.003	0.61	0.0	0.04	16.77	0.01	2.029	5.99	0.15	5.1	94.9	0.1	-0.85	0.74	0.72	1.92	1.6	0.005	0.71	0.0	0.04	17.50	0.01	2.384	4.89	4.16	6.0	94.0	0.0	-0.61	0.45	0.74	0.73	1.98	12214	1552	2	0	0	0	0	logfile
✔	9UTC	64488	2025-07-26	2025-05-03	3.33	2.50	3.52	2.1	0.005	0.69	0.0	0.04	17.20	0.01	1.710	14.10	0.33	9.4	90.6	0.0	-1.85	0.73	0.72	1.86	2.1	0.003	0.70	0.0	0.04	17.73	0.00	2.468	9.80	3.68	5.6	94.4	0.0	-1.14	0.38	0.74	0.73	1.79	8143	1026	3	0	2	0	0	logfile
✔	9UTA	64486	2025-07-24	2025-05-03	3.77	4.38	3.89	4.2	0.006	0.83	0.0	0.04	16.78	0.01	2.186	11.71	0.19	9.2	90.8	0.0	-1.45	0.65	0.70	0.52	4.3	0.005	1.26	1.0	0.05	17.84	0.01	2.374	11.07	4.82	5.4	94.6	0.0	1.14	1.59	0.65	0.73	0.61	4701	602	2	0	0	0	0	logfile
✔	9UTB	64487	2025-07-30	2025-05-03	3.59	4.25	3.68	3.9	0.003	0.64	0.0	0.04	16.65	0.01	2.074	16.03	0.15	7.6	92.3	0.1	-1.11	0.73	0.69	1.17	4.0	0.004	0.82	0.0	0.04	17.57	0.00	2.434	15.47	3.71	5.7	94.1	0.2	-0.26	1.71	0.75	0.75	0.78	12471	1584	3	0	2	0	0	logfile
✔	9UT9	64485	2025-07-26	2025-05-03	3.18	3.90	3.31	3.7	0.004	0.60	0.0	0.04	16.57	0.00	2.192	4.78	0.23	7.4	92.5	0.1	-1.60	0.86	0.85	2.96	3.7	0.003	0.59	0.0	0.04	16.65	0.00	2.546	3.25	1.14	4.4	95.5	0.1	0.00	0.67	0.84	0.86	1.97	7958	1004	2	0	0	0	0	logfile
✔	9R2F	53527	2025-07-24	2025-04-30	2.8	3.07	2.81	3.2	0.011	2.27	4.0	0.13	11.01	0.01	2.553	0.00	0.27	10.2	89.8	0.0	-3.55	0.44	0.82	5.74	3.2	0.004	0.84	0.0	0.05	15.31	0.01	2.273	8.04	1.61	10.0	90.0	0.0	-2.99	0.98	0.40	0.85	4.42	6720	432	6	0	0	0	3426	logfile
✔	9R2H	53530	2025-07-24	2025-04-30	2.6	2.55	2.55	2.6	0.011	2.00	6.0	0.12	11.47	0.01	2.571	0.00	0.00	4.6	95.4	0.0	-3.09	0.40	0.80	5.26	2.6	0.003	0.61	0.0	0.05	16.91	0.00	2.325	2.07	2.31	4.3	95.7	0.0	-2.99	2.86	0.46	0.88	5.21	5316	357	3	0	0	0	2667	logfile
✔	9oF0	70416	2025-07-28	2025-04-29	3.6	3.85	3.60	3.8	0.004	0.59	0.0	0.04	20.15	0.00	2.131	8.88	0.00	1.8	98.2	0.0	0.43	0.72	0.80	1.93	3.8	0.003	0.53	0.0	0.04	21.05	0.00	2.470	9.25	0.74	2.5	97.5	0.0	0.84	0.52	0.73	0.80	1.62	10236	582	4	42	0	0	4664	logfile
✔	9oDB	70353	2025-07-24	2025-04-26	4.0	4.29	3.84	4.1	0.007	1.21	0.0	0.06	10.69	0.01	2.208	1.47	0.00	5.0	95.0	0.0	-0.09	0.69	0.73	—	4.1	0.006	1.33	1.0	0.05	15.50	0.01	2.330	22.44	3.63	6.8	93.0	0.2	-1.15	1.12	0.71	0.76	—	4862	631	8	0	2	0	0	logfile
✔	9UoK	64380	2025-07-24	2025-04-25	3.05	3.48	3.02	3.4	0.003	0.73	0.0	0.04	15.03	0.00	2.496	4.90	0.60	5.0	95.0	0.0	-1.40	0.67	0.80	3.08	3.5	0.003	0.64	0.0	0.04	15.74	0.00	2.572	5.50	2.85	5.7	94.3	0.0	-1.26	0.37	0.67	0.81	2.59	5851	752	4	0	0	0	0	logfile
✔	9oC4	70308	2025-07-29	2025-04-23	2.1	2.23	2.18	2.2	0.003	0.56	0.0	0.04	16.37	0.01	2.036	5.86	0.79	2.2	97.8	0.0	1.02	0.67	0.86	4.42	2.2	0.003	0.56	0.0	0.04	16.63	0.00	1.985	4.97	1.84	1.9	98.1	0.0	1.73	0.97	0.67	0.86	4.28	11068	1455	9	0	7	90	0	logfile
✔	9oBP	70295	2025-07-24	2025-04-23	2.5	2.58	2.46	2.6	0.004	0.54	0.0	0.05	18.21	0.00	1.228	13.06	0.00	3.4	96.6	0.0	-1.82	0.47	0.80	3.61	2.6	0.007	0.73	0.0	0.06	19.19	0.00	2.422	7.41	7.69	5.8	94.2	0.0	-2.05	0.37	0.47	0.81	3.36	5310	750	15	0	25	0	0	logfile
✔	9UMH	64274	2025-07-26	2025-04-22	3.1	3.54	1.92	3.5	0.008	1.17	0.0	0.07	11.43	0.00	2.301	1.08	0.00	10.1	89.5	0.4	-2.39	0.50	0.64	5.27	3.5	0.005	0.65	0.0	0.05	16.44	0.00	2.403	3.83	2.14	14.5	85.5	0.0	-1.73	1.91	0.54	0.77	4.83	8421	567	21	0	0	0	4263	logfile
✔	9UGB	64135	2025-07-31	2025-04-11	3.25	3.47	3.27	3.5	0.004	0.72	2.0	0.05	15.66	0.00	2.242	11.90	0.29	3.2	96.8	0.0	0.79	0.62	0.75	1.60	3.5	0.004	0.58	1.0	0.04	16.79	0.00	2.192	8.35	1.90	3.8	96.2	0.0	1.31	1.36	0.60	0.77	2.24	12942	840	2	0	0	0	6509	logfile

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