Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9HNP	52311	2025-07-30	2024-12-11	2.53	2.08	2.55	1.9	0.014	1.86	0.0	0.11	13.61	0.04	2.429	4.73	0.34	0.8	99.2	0.0	-0.45	0.77	0.78	5.12	1.9	0.004	0.61	0.0	0.04	14.18	0.01	2.492	4.73	1.19	1.3	98.7	0.0	1.94	1.24	0.78	0.80	3.57	11864	766	4	0	4	0	5940	logfile
✔	9MFU	48237	2025-07-24	2024-12-10	2.87	2.58	2.40	2.4	0.042	4.25	42.0	0.20	21.84	0.01	2.598	12.83	13.51	23.3	76.7	0.0	-3.12	0.69	0.91	5.53	2.2	0.124	3.60	46.0	0.25	24.99	0.02	2.238	5.40	8.30	26.4	73.3	0.2	-6.58	0.84	0.70	0.94	5.22	6776	616	98	0	98	0	0	logfile
✔	9KZC	62659	2025-07-25	2024-12-10	2.78	2.97	35.16	3.0	0.002	0.48	0.0	0.04	13.42	0.00	2.232	6.54	0.00	2.4	97.6	0.0	-0.91	0.70	0.85	3.76	3.0	0.003	0.55	0.0	0.04	16.15	0.00	2.238	6.21	2.38	2.4	97.6	0.0	-1.02	0.29	0.72	0.88	3.25	7846	993	5	0	4	0	0	logfile
✔	9MGA	48244	2025-07-23	2024-12-10	2.85	2.34	2.53	2.1	0.035	3.30	0.0	0.09	18.89	0.02	2.556	9.86	5.88	14.3	85.7	0.0	-5.15	0.62	0.81	5.89	1.9	0.154	4.68	32.0	0.29	22.93	0.04	1.916	13.36	10.92	22.1	77.2	0.7	-5.81	1.34	0.69	0.91	4.62	4599	420	63	0	63	0	0	logfile
✔	9MF5	48224	2025-07-28	2024-12-09	3.2	4.14	3.33	3.8	0.008	1.09	0.0	0.07	15.15	0.00	1.942	3.59	0.00	1.8	98.2	0.0	0.55	0.88	0.82	1.51	3.8	0.003	0.64	0.0	0.04	16.70	0.00	2.141	9.04	1.36	1.6	98.4	0.0	1.78	1.18	0.89	0.84	1.19	9993	1244	4	0	2	0	0	logfile
✔	9KY5	62640	2025-07-25	2024-12-08	3.6	4.04	3.69	4.0	0.005	0.71	0.0	0.04	14.69	0.00	2.204	15.18	1.27	7.0	93.0	0.0	-3.42	0.57	0.80	1.78	4.0	0.003	0.70	0.0	0.04	16.60	0.00	2.464	9.16	2.53	5.4	94.6	0.0	0.34	0.98	0.52	0.76	1.38	7277	935	3	0	0	0	0	logfile
✘	9MEK	48216	2025-07-23	2024-12-06	2.85	3.15	2.88	3.1	0.003	0.53	0.0	0.03	14.27	0.00	2.306	6.84	1.68	2.1	97.9	0.0	3.48	0.58	0.84	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3594	478	4	0	6	0	0	logfile
✔	9MEL	48217	2025-07-23	2024-12-06	3.17	3.39	3.13	3.4	0.004	0.73	0.0	0.05	20.72	0.00	2.206	4.44	1.72	3.9	96.1	0.0	3.40	0.56	0.82	1.52	3.4	0.002	0.54	0.0	0.03	15.14	0.00	2.535	2.78	2.30	2.6	97.4	0.0	4.24	0.28	0.57	0.82	2.21	3589	476	4	0	4	0	0	logfile
✔	9ELY	48162	2025-07-23	2024-12-05	2.9	3.17	2.91	3.1	0.003	0.70	0.0	0.06	21.92	0.01	2.339	0.15	0.00	0.0	0.0	0.0	—	0.62	0.82	—	3.1	0.006	0.81	0.0	0.05	22.09	0.01	2.533	3.38	0.00	0.0	0.0	0.0	—	0.96	0.67	0.90	—	4334	0	1	202	0	0	0	logfile
✔	9MDL	48173	2025-07-30	2024-12-05	4.19	4.42	4.21	4.3	0.003	0.77	0.0	0.05	14.40	0.00	2.243	5.30	0.14	9.2	90.8	0.0	-2.10	0.71	0.68	—	4.3	0.003	0.62	0.0	0.04	14.30	0.00	1.790	7.34	0.00	9.1	90.9	0.0	-1.87	0.97	0.72	0.70	—	12237	1569	6	0	9	0	0	logfile
✔	9HLW	52273	2025-07-31	2024-12-05	2.66	3.39	2.70	3.2	0.004	0.72	0.0	0.05	17.57	0.00	1.993	12.06	1.29	3.9	96.1	0.0	0.18	0.86	0.85	3.39	3.1	0.003	0.65	0.0	0.04	14.18	0.00	2.029	8.60	1.36	3.4	96.6	0.0	0.53	0.34	0.82	0.81	3.44	13375	1632	12	0	35	0	0	logfile
✔	9MCW	48163	2025-07-30	2024-12-05	2.9	2.98	2.93	3.0	0.015	1.57	0.0	0.16	22.43	0.02	2.298	0.05	0.00	0.0	0.0	0.0	—	0.74	0.81	—	3.0	0.008	0.81	0.0	0.04	23.17	0.01	2.457	3.33	0.00	0.0	0.0	0.0	—	1.11	0.80	0.89	—	13206	0	2	616	0	0	0	logfile
✔	9KWi	62611	2025-07-27	2024-12-05	3.19	3.45	3.24	3.4	0.003	0.52	0.0	0.04	16.98	0.00	1.952	8.06	2.94	3.0	96.9	0.2	1.98	0.69	0.86	2.15	3.4	0.003	0.52	0.0	0.04	17.29	0.00	1.939	6.37	3.67	3.1	96.8	0.1	2.31	1.71	0.70	0.87	1.93	9127	1190	4	0	4	0	0	logfile
✔	9MDi	48171	2025-07-26	2024-12-05	3.56	3.84	3.60	3.9	0.004	0.81	0.0	0.05	18.39	0.01	2.248	4.80	0.76	7.5	92.5	0.0	-2.59	0.72	0.79	2.33	3.8	0.008	0.84	0.0	0.05	18.51	0.00	1.613	9.10	3.69	11.3	88.7	0.0	-2.25	0.94	0.71	0.81	2.30	8139	1043	4	0	6	0	0	logfile
✔	9KUS	62579	2025-07-24	2024-12-04	3.42	3.70	3.45	3.8	0.003	0.60	0.0	0.04	15.11	0.01	2.305	4.44	0.33	2.0	98.0	0.0	0.84	0.67	0.81	2.58	3.8	0.003	0.61	0.0	0.04	16.22	0.01	2.622	4.08	2.67	2.7	97.3	0.0	2.01	0.83	0.66	0.83	2.11	5488	710	2	0	0	0	0	logfile
✔	9ELG	48148	2025-07-23	2024-12-04	3.71	3.92	3.68	3.9	0.008	1.33	3.0	0.09	13.82	0.02	2.006	2.76	0.00	3.8	96.2	0.0	0.30	0.63	0.77	3.66	3.9	0.004	0.73	0.0	0.05	13.56	0.00	2.506	7.79	3.52	4.0	96.0	0.0	-0.92	0.56	0.66	0.80	2.81	4255	510	5	0	11	0	0	logfile
✔	9ELE	48146	2025-07-24	2024-12-04	3.16	3.42	3.20	3.4	0.006	1.27	0.0	0.06	13.42	0.01	1.965	2.91	0.00	1.0	99.0	0.0	0.59	0.68	0.85	4.29	3.4	0.003	0.57	0.0	0.04	14.41	0.00	2.546	5.34	2.04	1.4	98.6	0.0	1.38	0.49	0.65	0.86	3.78	6529	780	8	0	13	0	0	logfile
✔	9EKU	48137	2025-07-31	2024-12-03	2.68	3.50	2.93	3.3	0.006	0.99	4.0	0.05	17.58	0.01	2.219	8.72	0.52	3.1	96.9	0.0	0.13	0.66	0.86	2.39	3.3	0.004	0.66	0.0	0.04	17.02	0.00	2.509	5.95	2.48	2.9	97.1	0.0	1.47	0.94	0.61	0.84	2.66	13956	1732	8	0	4	0	0	logfile
✔	9EKC	48119	2025-07-28	2024-12-02	3.8	4.21	3.74	18.0	0.004	0.86	0.0	0.03	15.02	0.01	2.625	5.52	0.10	0.8	99.2	0.0	1.16	0.58	0.87	0.29	19.0	0.002	0.63	0.0	0.02	17.13	0.00	2.623	5.21	4.31	0.0	100.0	0.0	7.42	1.21	0.59	0.87	-0.70	10659	1326	102	0	0	0	0	logfile
✔	9EKB	48117	2025-07-31	2024-12-02	3.65	4.27	3.76	4.2	0.005	1.02	0.0	0.04	9.44	0.00	2.205	4.69	1.91	3.5	96.4	0.1	1.07	0.77	0.76	1.86	4.2	0.003	0.55	0.0	0.04	12.57	0.00	2.573	4.80	1.98	3.3	96.5	0.1	1.65	1.29	0.78	0.77	1.27	13324	1694	5	0	2	0	0	logfile

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