Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y88	39037	2024-08-11	2024-02-06	3.03	2.43	3.05	2.2	0.002	0.41	0.0	0.04	7.75	0.00	2.210	4.18	1.72	3.8	96.2	0.0	-3.28	0.75	0.76	3.28	2.1	0.003	0.72	1.0	0.05	12.54	0.00	2.292	5.04	2.68	5.5	94.5	0.0	-0.79	0.53	0.77	0.82	2.71	31257	4031	12	0	27	0	0	logfile
✔	8VXY	43643	2024-08-05	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.003	0.67	0.0	0.04	18.47	0.00	2.528	15.19	1.20	4.3	95.7	0.0	-0.71	1.42	0.65	0.67	0.92	12324	1406	5	62	1	0	0	logfile
✔	8Y93	39068	2024-08-03	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.003	0.66	0.0	0.04	15.49	0.00	2.300	8.02	2.84	3.2	96.8	0.0	1.18	1.07	0.61	0.82	1.76	9055	1130	3	0	3	0	0	logfile
✔	8Y8E	39043	2024-08-09	2024-02-06	3.62	2.58	3.68	1.8	0.002	0.43	0.0	0.04	8.47	0.00	2.211	6.06	2.45	5.7	94.3	0.0	-3.40	0.67	0.60	1.08	1.7	0.003	0.68	0.0	0.04	12.30	0.00	2.513	8.81	3.33	10.2	89.8	0.0	-2.26	1.00	0.69	0.64	0.84	26640	3538	6	0	16	0	0	logfile
✘	8Y8J	39048	2024-08-02	2024-02-06	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5069	608	10	0	18	0	0	logfile
✔	8Y8D	39042	2024-08-10	2024-02-06	3.41	3.76	3.60	3.7	0.002	0.44	0.0	0.04	8.48	0.00	2.230	4.65	1.41	3.6	96.4	0.0	-3.34	0.75	0.81	2.61	3.6	0.004	0.64	0.0	0.05	11.73	0.00	2.463	6.15	2.33	6.3	93.7	0.0	-1.01	1.01	0.77	0.86	2.59	27867	3529	8	0	31	0	0	logfile
✘	8Y8B	39040	2024-08-03	2024-02-06	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7303	902	14	0	26	0	0	logfile
✔	8Y8C	39041	2024-08-10	2024-02-06	2.95	3.16	3.00	3.2	0.002	0.40	0.0	0.04	6.86	0.00	2.219	3.81	0.80	2.2	97.8	0.0	-1.59	0.75	0.84	3.94	3.1	0.004	0.60	0.0	0.04	13.07	0.00	2.396	3.13	2.28	3.9	96.1	0.0	-0.41	0.56	0.77	0.90	3.96	27789	3548	6	0	25	0	0	logfile
✔	8Y95	39070	2024-08-03	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.64	0.0	0.04	15.01	0.00	2.323	10.39	4.01	3.6	96.4	0.0	0.82	1.10	0.56	0.79	2.52	9018	1124	4	0	6	0	0	logfile
✔	8Y86	39035	2024-08-03	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.004	0.55	0.0	0.04	15.81	0.00	2.594	1.81	2.05	2.0	98.0	0.0	2.00	0.19	0.54	0.79	2.40	8060	1028	4	0	2	0	0	logfile
✔	8Y8i	39047	2024-08-10	2024-02-06	3.58	2.86	3.64	2.0	0.002	0.40	0.0	0.04	7.75	0.00	2.216	6.32	3.10	3.5	96.5	0.0	-2.74	0.63	0.54	0.63	1.9	0.006	0.84	2.0	0.05	12.34	0.01	1.927	14.91	2.49	7.1	92.9	0.0	-1.61	0.74	0.66	0.60	0.71	27728	3567	6	0	6	0	0	logfile
✔	8Y94	39069	2024-08-03	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.69	0.0	0.04	15.05	0.00	2.532	11.98	2.42	2.8	97.2	0.0	0.92	1.17	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8Y8G	39045	2024-08-10	2024-02-06	3.23	3.55	3.37	3.5	0.002	0.43	0.0	0.04	8.08	0.00	2.236	4.64	1.19	3.4	96.6	0.0	-3.23	0.75	0.83	3.07	3.5	0.004	0.60	0.0	0.04	11.95	0.00	2.422	4.66	2.28	5.7	94.2	0.0	-0.99	0.69	0.78	0.89	3.02	27828	3527	11	0	31	0	0	logfile
✘	8Y8H	39046	2024-08-09	2024-02-06	3.65	2.56	3.75	1.8	0.002	0.42	0.0	0.04	7.61	0.00	2.225	5.50	1.54	4.1	95.9	0.0	-3.71	0.66	0.59	1.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27359	3545	6	0	11	0	0	logfile
✔	8Y87	39036	2024-08-10	2024-02-06	3.26	2.50	3.33	2.2	0.002	0.43	0.0	0.04	7.82	0.00	2.244	4.09	1.77	3.2	96.8	0.0	-2.35	0.75	0.75	3.02	2.2	0.004	0.61	0.0	0.05	12.53	0.00	2.139	5.34	2.84	4.9	95.1	0.0	-0.74	0.60	0.77	0.82	2.91	29531	3778	10	0	29	0	0	logfile
✔	8Y8K	39050	2024-08-03	2024-02-06	2.89	3.09	2.92	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.1	0.004	0.54	0.0	0.04	16.48	0.01	2.612	3.08	2.62	2.5	97.5	0.0	1.91	0.31	0.57	0.79	1.38	8052	1028	2	0	0	0	0	logfile
✘	8Y7Y	39026	2024-08-03	2024-02-05	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6860	861	13	0	27	0	0	logfile
✔	8VXQ	43629	2024-08-11	2024-02-05	3.1	3.71	3.15	3.6	0.004	0.71	1.0	0.03	18.79	0.01	2.202	3.22	0.37	6.7	93.2	0.0	1.68	0.65	0.78	1.03	3.6	0.003	0.58	0.0	0.03	19.11	0.00	2.419	4.99	3.35	6.1	93.7	0.2	2.40	0.37	0.63	0.78	1.06	31572	4158	18	0	0	0	0	logfile
✔	8RWK	19549	2024-08-06	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.5	0.003	0.59	0.0	0.04	16.10	0.00	2.518	4.92	2.32	2.6	97.4	0.0	0.92	2.41	0.73	0.77	2.27	15416	1980	8	0	4	0	0	logfile
✔	8Y85	39034	2024-08-03	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.004	0.62	0.0	0.04	16.90	0.01	2.609	2.47	1.82	2.7	97.3	0.0	1.98	0.26	0.59	0.79	1.94	8116	1028	4	0	4	0	0	logfile

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