Table showing results for August 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9S37	54527	2025-08-22	2025-07-23	3.94	4.35	3.56	3.9	0.006	1.43	12.0	0.08	16.80	0.01	2.330	3.00	2.12	4.5	95.4	0.1	-0.35	0.72	0.84	2.37	4.0	0.003	0.75	0.0	0.04	17.13	0.00	2.526	5.53	4.62	4.2	95.8	0.0	0.29	0.48	0.72	0.84	2.22	7364	959	3	0	0	0	0	logfile
✔	9RZF	54402	2025-08-22	2025-07-15	3.8	2.96	3.84	3.0	0.004	0.86	0.0	0.06	16.07	0.00	2.564	7.84	0.00	5.9	94.1	0.0	-2.48	0.32	0.67	4.40	3.0	0.004	0.66	0.0	0.05	18.34	0.00	2.566	7.84	6.06	6.8	93.2	0.0	-2.45	1.57	0.34	0.69	3.03	2538	366	6	0	0	0	0	logfile
✔	9VQM	65260	2025-08-25	2025-07-05	3.5	3.96	3.74	3.9	0.003	0.75	15.0	0.05	14.73	0.00	2.116	11.28	0.37	4.2	95.8	0.0	-0.71	0.73	0.70	1.49	3.8	0.003	0.66	0.0	0.04	15.28	0.00	2.130	9.97	1.80	4.7	95.3	0.0	-0.61	1.31	0.73	0.71	1.55	24538	3162	11	0	21	0	0	logfile
✔	9VQL	65259	2025-08-23	2025-07-05	3.6	3.88	3.58	4.1	0.005	0.94	8.0	0.06	13.60	0.01	2.115	13.51	0.80	6.2	93.8	0.1	-0.95	0.53	0.33	0.57	3.9	0.003	0.78	0.0	0.04	15.73	0.00	2.557	10.36	1.99	5.3	94.7	0.0	-1.15	1.41	0.74	0.70	1.48	12122	1626	8	0	14	0	0	logfile
✔	9PFG	71601	2025-08-25	2025-07-04	3.58	3.87	3.67	3.8	0.004	0.59	0.0	0.04	15.88	0.00	1.953	8.52	0.74	2.4	97.5	0.1	1.50	0.76	0.79	0.43	3.8	0.003	0.51	0.0	0.03	16.91	0.00	2.241	4.28	1.95	2.3	97.6	0.1	3.20	0.49	0.75	0.79	0.65	27563	1760	17	0	0	24	13655	logfile
✔	9RS6	54211	2025-08-22	2025-06-30	3.0	3.70	2.98	3.4	0.003	0.68	0.0	0.04	13.76	0.00	2.232	9.86	0.00	3.7	96.3	0.0	-0.81	0.81	0.82	2.79	3.4	0.003	0.67	0.0	0.04	15.45	0.00	2.585	11.01	1.46	3.5	96.5	0.0	-0.22	0.77	0.81	0.83	2.72	6972	891	2	0	0	0	0	logfile
✔	9RS7	54212	2025-08-22	2025-06-30	3.0	3.67	2.99	3.4	0.003	0.59	0.0	0.04	15.61	0.00	2.173	14.20	0.67	3.9	96.1	0.0	0.29	0.85	0.84	2.63	3.4	0.004	0.73	0.0	0.04	16.37	0.00	2.477	11.96	2.35	3.9	96.1	0.0	0.36	0.31	0.81	0.84	2.17	8250	1052	3	0	0	0	0	logfile
✔	9VMX	65195	2025-08-26	2025-06-29	3.2	3.34	2.97	3.3	0.009	1.44	21.0	0.09	26.46	0.01	1.111	25.62	42.24	11.6	85.7	2.7	-4.08	0.46	0.51	1.34	3.3	0.006	0.92	3.0	0.04	19.11	0.01	2.010	12.24	4.62	7.1	92.5	0.4	0.15	3.80	0.63	0.79	2.25	32172	3903	12	0	18	0	0	logfile
✔	9PC6	71497	2025-08-25	2025-06-27	3.96	4.92	4.13	4.0	0.003	0.58	0.0	0.04	15.05	0.00	2.148	16.76	1.91	2.7	97.3	0.0	0.69	0.90	0.84	0.78	4.1	0.003	0.63	0.0	0.04	15.65	0.00	2.460	13.04	3.65	3.2	96.8	0.0	0.58	0.44	0.90	0.85	0.91	29408	3977	6	0	0	0	0	logfile
✔	9PAT	71445	2025-08-25	2025-06-25	3.96	4.93	4.23	4.0	0.003	0.57	0.0	0.04	15.22	0.00	2.118	14.93	0.19	3.2	96.8	0.0	0.28	0.90	0.81	0.81	4.0	0.003	0.58	0.0	0.04	15.78	0.00	2.536	12.27	3.33	3.6	96.4	0.0	0.56	0.40	0.91	0.85	0.97	25653	3465	7	0	0	0	0	logfile
✔	9PAV	71446	2025-08-25	2025-06-25	3.22	4.12	3.46	3.5	0.003	0.56	0.0	0.04	15.48	0.00	2.198	10.08	0.49	2.9	97.1	0.0	0.15	0.86	0.81	1.26	3.6	0.002	0.59	0.0	0.04	15.87	0.00	2.507	7.67	2.13	2.6	97.4	0.0	0.53	0.60	0.87	0.83	1.36	25647	3465	7	0	0	0	0	logfile
✔	9VKV	65144	2025-08-24	2025-06-24	2.09	2.22	2.14	2.3	0.007	0.68	0.0	0.05	15.24	0.00	2.219	2.44	1.61	4.2	95.8	0.0	0.52	0.72	0.91	7.43	2.3	0.003	0.51	0.0	0.04	15.08	0.00	2.558	2.29	1.55	2.8	97.2	0.0	0.70	0.86	0.71	0.91	7.21	18339	2385	30	0	0	1644	0	logfile
✘	9P8V	71390	2025-08-25	2025-06-23	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30156	3688	16	0	24	0	0	logfile
✔	9RP3	54139	2025-08-22	2025-06-23	2.1	3.06	2.15	2.7	0.003	0.66	0.0	0.04	15.01	0.01	2.465	8.45	0.72	1.3	98.7	0.0	1.56	0.79	0.82	4.11	2.7	0.004	0.58	0.0	0.04	15.72	0.00	2.543	9.16	1.16	1.5	98.5	0.0	1.49	3.27	0.78	0.81	3.69	6349	799	2	0	0	0	0	logfile
✔	9P6H	71309	2025-08-22	2025-06-19	2.75	3.35	2.79	3.2	0.007	1.01	0.0	0.06	23.35	0.02	2.215	11.68	0.32	4.6	95.3	0.1	-0.73	0.52	0.83	3.40	3.2	0.004	0.72	0.0	0.05	15.77	0.01	2.288	5.84	1.61	2.9	97.0	0.1	0.09	0.49	0.49	0.82	2.76	5963	701	7	0	21	0	0	logfile
✔	9ViB	65082	2025-08-22	2025-06-18	2.26	2.38	2.26	2.4	0.015	1.80	2.0	0.09	17.07	0.03	2.360	3.14	5.29	1.8	97.8	0.4	-1.15	0.61	0.79	4.99	2.4	0.004	0.67	0.0	0.04	17.11	0.01	2.626	3.71	1.10	1.1	98.9	0.0	3.60	1.10	0.72	0.85	4.55	4486	566	8	0	8	0	0	logfile
✔	9ViE	65085	2025-08-22	2025-06-18	2.38	2.55	2.40	2.6	0.014	1.64	0.0	0.09	16.94	0.02	2.252	1.92	2.92	1.8	98.2	0.0	-1.60	0.59	0.77	4.92	2.6	0.004	0.59	0.0	0.04	18.22	0.00	2.628	4.59	1.67	0.4	99.6	0.0	3.27	0.45	0.65	0.79	3.60	4746	574	8	0	8	0	0	logfile
✔	9ViD	65084	2025-08-22	2025-06-18	2.22	2.36	2.21	2.4	0.013	1.54	2.0	0.10	16.08	0.02	2.386	1.71	0.00	1.8	98.2	0.0	-0.11	0.59	0.75	5.13	2.4	0.004	0.61	0.0	0.04	17.84	0.00	2.633	4.05	2.50	0.4	99.6	0.0	3.58	1.11	0.72	0.82	4.01	4746	574	8	0	8	0	0	logfile
✔	9ViC	65083	2025-08-22	2025-06-18	2.45	2.63	2.46	2.7	0.016	1.76	6.0	0.09	16.51	0.03	2.069	3.71	3.96	1.4	97.5	1.1	-2.50	0.60	0.78	3.63	2.7	0.003	0.63	0.0	0.04	17.37	0.01	2.594	4.83	2.86	0.7	98.9	0.4	3.84	1.12	0.70	0.83	2.89	4486	566	8	0	8	0	0	logfile
✘	9P6B	71303	2025-08-24	2025-06-18	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22762	2568	12	0	42	92	0	logfile

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