Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JA0	61286	2024-09-28	2024-08-23	3.14	3.38	3.16	3.4	0.003	0.67	0.0	0.04	11.92	0.01	1.961	8.89	0.00	2.8	97.2	0.0	-4.28	0.75	0.86	3.05	3.4	0.003	0.53	0.0	0.04	14.29	0.00	2.643	4.79	1.10	4.6	95.4	0.0	0.91	0.94	0.72	0.85	2.72	19716	2628	12	0	0	0	0	logfile
✔	9GG6	51325	2024-09-23	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.72	0.0	0.05	17.52	0.00	2.556	4.34	6.02	9.2	90.8	0.0	-2.30	0.53	0.40	0.89	4.37	2142	288	3	0	0	0	0	logfile
✔	9GGQ	51339	2024-09-30	2024-08-13	2.6	3.32	2.71	3.0	0.003	0.50	0.0	0.04	14.80	0.00	1.848	3.87	0.37	3.4	96.6	0.0	0.28	0.80	0.87	3.45	3.1	0.003	0.58	0.0	0.04	16.42	0.00	1.922	3.62	1.03	3.6	96.4	0.0	0.86	0.99	0.80	0.89	2.82	24628	2905	16	84	6	8	0	logfile
✔	9GG1	51320	2024-09-23	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.69	0.0	0.05	15.90	0.00	2.495	3.02	0.81	3.6	95.5	1.0	-2.36	0.91	0.46	0.92	6.83	3232	428	4	0	0	0	0	logfile
✔	9GG0	51319	2024-09-23	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.58	0.0	0.05	15.92	0.00	2.577	2.45	1.47	2.2	97.8	0.0	-2.14	0.33	0.39	0.88	5.59	2385	321	3	0	0	0	0	logfile
✔	9GD0	51238	2024-09-28	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.65	0.0	0.03	28.08	0.00	2.268	7.19	2.19	1.7	98.3	0.0	2.43	1.33	0.88	0.86	2.27	20207	1253	16	500	0	0	0	logfile
✔	9GD3	51247	2024-09-28	2024-08-04	3.0	3.49	2.92	3.1	0.005	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.67	0.0	0.04	24.17	0.00	1.316	6.64	1.13	2.1	97.9	0.0	1.99	1.09	0.86	0.89	2.60	19030	1630	13	284	3	0	0	logfile
✘	9CX6	45979	2024-09-23	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✔	9GAW	13931	2024-09-27	2024-07-29	2.9	2.23	2.97	2.7	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.79	0.79	2.07	2.0	0.004	0.67	0.0	0.04	17.46	0.00	2.343	9.19	3.11	3.0	97.0	0.0	1.32	0.56	0.79	0.81	2.22	66640	8600	24	0	6	0	0	logfile
✔	9GAW	51190	2024-09-27	2024-07-29	2.9	3.95	—	3.2	0.004	0.70	0.0	0.04	15.06	0.00	2.198	11.60	0.78	3.1	96.8	0.0	1.23	0.86	0.80	1.97	3.2	0.003	0.64	0.0	0.04	15.68	0.00	2.154	8.36	1.06	2.8	97.2	0.0	1.72	3.24	0.91	0.88	1.91	66640	8600	24	0	6	0	0	logfile
✔	9iWQ	60959	2024-09-23	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.003	0.45	0.0	0.04	13.94	0.00	2.575	0.70	0.32	0.5	99.5	0.0	3.45	0.96	0.21	0.91	5.06	5683	387	1	0	0	0	2830	logfile
✔	9CPo	45805	2024-09-30	2024-07-18	3.5	3.83	3.56	3.9	0.003	0.49	0.0	0.04	15.92	0.00	2.159	4.11	0.00	4.7	95.3	0.0	0.08	0.66	0.77	2.63	3.8	0.004	0.51	0.0	0.04	16.10	0.00	2.361	3.28	2.11	5.2	94.8	0.0	0.01	0.26	0.68	0.79	2.24	24089	1392	7	63	2	0	11624	logfile
✔	9CMi	45749	2024-09-24	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.002	0.87	0.0	0.04	15.65	0.00	2.305	7.81	1.97	3.6	96.4	0.0	0.08	0.97	0.76	0.78	2.60	7877	1025	7	0	1	2	0	logfile
✔	9CMH	45748	2024-09-23	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.78	0.0	0.04	15.85	0.00	2.523	19.55	4.09	4.5	95.5	0.0	-0.93	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	9CLP	45728	2024-09-23	2024-07-12	3.43	3.82	3.39	3.8	0.002	0.52	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.002	0.53	0.0	0.04	14.04	0.00	2.303	4.93	1.28	2.5	97.5	0.0	0.34	0.68	0.65	0.78	2.06	5035	650	5	0	11	0	0	logfile
✔	9G2U	50984	2024-09-23	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.51	0.0	0.03	16.06	0.00	2.565	6.99	1.80	0.4	99.6	0.0	6.36	4.28	0.71	0.83	0.58	3634	456	2	0	0	0	0	logfile
✔	9G2R	50981	2024-09-29	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.003	0.62	1.0	0.03	15.88	0.00	2.515	9.38	1.24	0.6	99.4	0.0	5.33	1.55	0.85	0.82	0.14	22620	2824	12	0	0	0	0	logfile
✔	9G2W	50986	2024-09-23	2024-07-11	3.6	4.37	3.63	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.60	0.0	0.03	16.55	0.00	2.514	6.23	1.46	0.8	99.2	0.0	6.06	0.73	0.68	0.83	0.91	3838	478	2	0	0	0	0	logfile
✔	9CKV	45655	2024-09-26	2024-07-09	3.19	3.71	3.28	3.6	0.005	0.66	0.0	0.05	16.35	0.00	1.734	1.63	0.00	4.8	95.2	0.0	-0.12	0.67	0.71	3.86	3.6	0.003	0.53	0.0	0.04	14.92	0.00	1.924	2.08	0.28	4.8	95.2	0.0	-0.30	0.52	0.71	0.77	3.41	13268	872	11	0	26	0	6375	logfile
✔	9iNY	60712	2024-09-24	2024-07-08	3.6	3.79	3.23	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.005	0.65	0.0	0.05	14.23	0.00	2.462	8.80	2.23	8.8	90.3	0.9	-2.67	1.37	0.67	0.84	2.27	8793	1125	3	0	0	0	0	logfile

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