Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9L99	62898	2025-09-18	2024-12-29	3.6	3.66	3.55	3.7	0.003	0.68	0.0	0.05	13.55	0.01	2.164	8.31	0.14	6.7	93.3	0.0	-2.75	0.65	0.83	2.90	3.7	0.003	0.63	0.0	0.04	15.14	0.00	2.243	6.31	5.67	6.7	93.3	0.0	-1.89	0.35	0.67	0.84	2.21	12710	1640	6	0	2	0	0	logfile
✔	9HVK	52436	2025-09-18	2024-12-29	3.0	3.92	3.04	3.6	0.004	0.76	0.0	0.04	18.60	0.01	2.096	17.00	0.19	3.8	96.1	0.1	-0.68	0.83	0.79	1.26	3.6	0.005	0.95	1.0	0.04	15.92	0.00	1.986	15.33	2.14	4.3	95.6	0.1	-0.18	0.42	0.83	0.79	1.56	15260	1886	14	0	35	0	0	logfile
✔	9HVi	52435	2025-09-18	2024-12-29	2.46	3.27	2.46	3.1	0.004	0.70	0.0	0.05	16.40	0.00	2.013	8.76	1.01	2.7	97.3	0.0	0.11	0.79	0.80	1.39	3.0	0.004	0.71	0.0	0.04	15.28	0.00	1.997	6.06	1.80	3.5	96.5	0.0	0.38	0.67	0.83	0.87	3.41	13352	1636	12	0	35	0	0	logfile
✔	9HVL	52437	2025-09-18	2024-12-29	2.71	2.90	2.74	2.9	0.004	0.67	0.0	0.05	18.64	0.00	2.017	9.14	3.20	4.0	96.0	0.0	-0.55	0.62	0.74	2.84	3.0	0.003	0.63	0.0	0.04	16.26	0.00	2.000	6.69	2.90	4.0	96.0	0.0	0.03	0.24	0.62	0.80	2.52	13246	1620	12	0	35	0	0	logfile
✔	9MoT	48481	2025-09-18	2024-12-27	3.15	2.63	3.06	3.1	0.004	0.80	0.0	0.05	13.94	0.01	2.447	19.20	0.29	12.2	87.8	0.0	-3.32	0.70	0.61	1.73	3.1	0.004	0.80	0.0	0.05	16.28	0.01	2.408	21.91	3.46	12.3	87.7	0.0	-3.53	1.01	0.71	0.63	1.46	12708	1561	6	0	8	0	0	logfile
✔	9MoV	48439	2025-09-18	2024-12-27	3.0	3.68	2.87	3.2	0.005	0.86	0.0	0.06	13.83	0.01	1.010	19.25	0.33	11.6	88.4	0.0	-3.02	0.70	0.48	1.10	3.3	0.004	0.88	0.0	0.05	16.47	0.00	2.075	22.69	2.53	10.4	89.6	0.0	-3.10	0.87	0.76	0.63	1.07	13898	1707	8	0	16	0	0	logfile
✔	9HVC	52431	2025-09-17	2024-12-26	2.24	2.61	2.27	2.8	0.006	1.61	0.0	0.04	19.50	0.01	2.184	4.45	0.00	0.0	100.0	0.0	2.75	0.18	0.58	1.04	2.6	0.003	0.42	0.0	0.04	17.42	0.00	2.617	5.34	1.96	0.0	100.0	0.0	3.79	1.00	0.25	0.86	3.53	578	69	2	0	1	31	0	logfile
✔	9L7M	62874	2025-09-18	2024-12-26	3.48	3.59	3.39	3.6	0.026	1.54	0.0	0.08	19.06	0.01	1.616	27.14	6.83	17.9	81.5	0.6	-6.00	0.62	0.74	1.49	3.5	0.003	0.75	0.0	0.04	18.19	0.00	1.958	7.79	2.62	4.0	96.0	0.0	-1.18	1.71	0.65	0.81	2.23	16181	2047	9	0	8	0	0	logfile
✘	9MNY	48443	2025-09-17	2024-12-24	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5332	675	7	0	1	0	0	logfile
✔	9MNZ	48444	2025-09-17	2024-12-24	2.73	2.24	2.80	2.0	0.020	1.50	0.0	0.09	14.22	0.01	2.151	11.27	0.70	11.5	88.5	0.0	-3.42	0.77	0.76	3.58	2.0	0.003	0.74	0.0	0.04	15.73	0.01	2.554	4.51	2.11	6.3	93.7	0.0	-0.95	0.39	0.79	0.79	2.97	5382	682	7	0	1	0	0	logfile
✔	9L6C	62852	2025-09-17	2024-12-24	3.33	2.45	3.21	2.2	0.002	0.58	0.0	0.04	15.30	0.00	2.255	6.93	0.27	5.5	94.2	0.3	-1.01	0.69	0.74	2.79	2.1	0.003	0.59	0.0	0.04	15.88	0.00	2.577	6.18	3.98	6.3	93.5	0.2	-1.07	0.33	0.69	0.77	3.25	6766	874	8	0	2	0	0	logfile
✔	9MNX	48442	2025-09-17	2024-12-24	3.11	2.25	3.05	2.0	0.021	1.47	0.0	0.09	14.42	0.01	2.195	11.97	0.54	13.6	86.4	0.0	-4.29	0.77	0.78	3.33	2.1	0.003	0.67	0.0	0.04	15.68	0.01	2.104	6.95	0.54	5.2	94.8	0.0	-2.12	0.37	0.76	0.79	2.40	5240	663	7	0	1	0	0	logfile
✔	9MNH	48423	2025-09-17	2024-12-21	4.03	4.35	3.39	4.1	0.005	1.08	0.0	0.06	13.65	0.01	2.267	3.91	0.16	7.5	92.4	0.1	-2.41	0.84	0.83	—	4.1	0.003	0.69	0.0	0.05	13.23	0.00	2.423	5.92	0.00	5.7	94.2	0.1	-0.57	1.17	0.85	0.84	—	10875	1383	12	0	30	0	0	logfile
✔	9MN4	48412	2025-09-18	2024-12-20	3.05	2.35	3.10	2.0	0.005	0.91	0.0	0.06	20.23	0.01	2.166	5.67	0.86	4.0	95.9	0.1	-1.20	0.61	0.53	1.90	2.0	0.004	0.64	0.0	0.04	20.33	0.01	2.495	8.85	2.16	4.2	95.8	0.0	0.41	0.35	0.72	0.71	1.48	14835	1578	6	103	0	0	0	logfile
✔	9L4C	62809	2025-09-19	2024-12-20	4.06	4.28	4.13	4.1	0.014	0.71	1.0	0.04	11.58	0.00	1.861	13.34	0.89	2.4	97.5	0.1	0.03	0.76	0.75	—	4.1	0.004	0.62	0.0	0.04	10.88	0.00	2.088	6.97	0.22	7.9	92.1	0.0	0.95	0.63	0.77	0.76	—	21507	2468	6	0	2	0	7891	logfile
✘	9MN9	48417	2025-09-17	2024-12-20	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8742	977	6	44	2	0	0	logfile
✔	9MMG	48391	2025-09-17	2024-12-20	3.25	3.43	3.25	3.9	0.004	0.90	0.0	0.04	23.97	0.01	2.249	5.77	0.00	0.0	0.0	0.0	—	0.64	0.35	—	1.6	0.007	0.92	0.0	0.05	25.62	0.01	2.080	27.32	0.00	0.0	0.0	0.0	—	1.94	0.93	0.87	—	9927	0	1	463	0	0	0	logfile
✔	9MN7	48415	2025-09-17	2024-12-20	2.65	2.18	2.68	2.1	0.005	0.93	0.0	0.05	17.44	0.01	2.236	4.90	0.00	4.7	95.3	0.0	-1.29	0.61	0.52	3.09	1.7	0.004	0.65	0.0	0.04	18.80	0.01	2.165	9.36	1.85	3.9	96.1	0.0	0.44	0.83	0.75	0.75	2.56	11788	1298	6	66	2	0	0	logfile
✔	9MN5	48413	2025-09-18	2024-12-20	3.04	2.30	3.06	3.0	0.005	1.00	0.0	0.09	21.11	0.01	1.785	8.58	0.86	3.1	96.9	0.0	-0.33	0.48	0.29	2.69	2.0	0.003	0.58	0.0	0.04	21.34	0.00	2.414	5.66	2.52	3.1	96.9	0.0	1.19	0.86	0.75	0.78	2.23	14759	1578	5	100	0	0	0	logfile
✔	9MMV	48404	2025-09-17	2024-12-20	3.79	2.98	3.74	1.4	0.004	0.82	0.0	0.05	15.10	0.01	1.340	10.75	1.08	3.5	96.2	0.2	1.43	0.89	0.84	2.37	1.5	0.004	0.67	0.0	0.04	15.13	0.00	2.530	6.82	5.93	5.1	94.8	0.1	0.76	0.61	0.89	0.84	2.20	4968	837	4	0	0	0	0	logfile

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