Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JUo	61832	2025-09-17	2024-10-08	3.1	2.82	3.07	3.2	0.005	0.70	0.0	0.05	16.18	0.00	2.047	13.24	0.43	5.3	94.7	0.0	0.76	0.65	0.81	1.94	3.2	0.003	0.60	0.0	0.04	16.66	0.00	1.956	9.03	2.47	5.1	94.9	0.0	1.18	0.43	0.67	0.84	1.90	8858	1144	2	0	4	0	0	logfile
✔	9JUP	61833	2025-09-17	2024-10-08	3.1	2.60	3.37	3.0	0.004	0.57	0.0	0.04	16.34	0.00	1.964	8.89	0.00	4.0	96.0	0.0	1.64	0.56	0.76	2.56	3.0	0.005	0.63	0.0	0.04	17.05	0.00	1.907	8.95	3.63	4.9	95.1	0.1	1.14	0.37	0.59	0.80	2.70	8656	1118	2	0	4	0	0	logfile
✔	9DVA	47194	2025-09-18	2024-10-07	3.1	3.30	3.09	3.3	0.003	0.51	0.0	0.04	14.23	0.00	2.077	4.00	0.00	1.2	98.8	0.0	0.25	0.62	0.81	3.20	3.3	0.003	0.57	0.0	0.04	15.78	0.00	2.193	4.11	1.50	1.9	98.1	0.0	0.92	1.09	0.70	0.86	2.44	18529	2354	13	0	10	0	0	logfile
✔	9JUB	61826	2025-09-17	2024-10-07	3.1	3.29	3.10	3.3	0.022	1.26	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	3.3	0.003	0.68	0.0	0.05	13.90	0.00	2.555	7.56	1.67	6.1	93.9	0.0	-1.06	0.60	0.62	0.74	2.82	6479	829	5	0	5	0	0	logfile
✔	9JTS	61816	2025-09-18	2024-10-07	3.36	4.12	3.41	3.9	0.003	0.58	0.0	0.04	19.47	0.00	2.221	10.32	0.18	4.1	95.9	0.0	-0.40	0.83	0.78	1.95	3.9	0.004	0.64	0.0	0.04	20.46	0.00	2.321	9.37	1.78	4.2	95.8	0.0	0.19	1.25	0.84	0.82	1.99	18706	1928	12	164	4	0	0	logfile
✔	9DVF	47202	2025-09-19	2024-10-07	3.38	3.55	3.38	3.5	0.004	0.64	0.0	0.04	15.04	0.01	2.333	2.66	0.46	0.7	99.3	0.0	-1.25	0.68	0.80	1.42	3.5	0.002	0.53	0.0	0.04	15.87	0.00	2.595	3.06	0.57	0.5	99.5	0.0	1.19	1.19	0.71	0.79	1.07	25968	3492	12	0	0	0	0	logfile
✔	9JTU	61817	2025-09-18	2024-10-07	3.43	4.12	3.54	3.9	0.003	0.58	0.0	0.04	19.41	0.00	2.200	10.44	0.12	4.5	95.5	0.0	-0.01	0.83	0.79	2.02	3.9	0.004	0.66	0.0	0.04	20.55	0.00	2.276	10.16	1.48	4.8	95.2	0.0	0.19	1.24	0.83	0.82	1.81	18706	1928	12	164	4	0	0	logfile
✔	9JTL	61811	2025-09-17	2024-10-05	3.4	3.58	3.47	3.6	0.004	0.84	0.0	0.04	16.57	0.00	2.253	6.77	0.33	4.1	95.9	0.0	1.43	0.55	0.78	2.44	3.6	0.003	0.63	0.0	0.04	16.63	0.00	2.552	5.70	2.31	4.7	95.3	0.0	1.91	0.89	0.56	0.80	2.77	2803	346	2	0	1	0	0	logfile
✔	9JTN	61813	2025-09-17	2024-10-05	3.1	3.40	3.11	3.4	0.004	0.77	0.0	0.04	18.28	0.00	2.217	2.31	0.00	3.8	96.2	0.0	2.08	0.58	0.82	4.25	3.4	0.003	0.55	0.0	0.04	18.03	0.00	2.583	3.55	2.32	2.9	97.1	0.0	2.10	0.28	0.56	0.83	3.81	2813	345	2	0	2	0	0	logfile
✔	9JTo	61814	2025-09-17	2024-10-05	3.3	3.49	3.38	3.6	0.012	0.74	0.0	0.04	16.88	0.00	2.257	4.96	0.00	4.7	95.3	0.0	2.01	0.57	0.80	2.42	3.6	0.003	0.53	0.0	0.04	15.96	0.00	2.353	3.01	1.98	5.0	95.0	0.0	2.61	0.92	0.55	0.81	2.23	2817	346	2	0	2	0	0	logfile
✔	9JTM	61812	2025-09-17	2024-10-05	2.9	3.27	3.03	3.3	0.005	0.90	0.0	0.05	18.22	0.00	2.337	4.08	0.00	6.1	93.9	0.0	1.14	0.49	0.78	3.11	3.3	0.003	0.58	0.0	0.04	16.29	0.00	2.499	2.66	0.99	5.3	94.7	0.0	1.96	0.34	0.51	0.80	2.75	2820	346	2	0	2	3	0	logfile
✔	9GZo	51729	2025-09-17	2024-10-04	3.15	4.06	3.14	3.5	0.007	1.04	0.0	0.09	18.23	0.01	2.148	8.07	0.56	3.2	96.8	0.0	0.74	0.85	0.76	2.02	3.5	0.003	0.65	0.0	0.04	19.00	0.00	2.460	8.79	1.77	2.8	97.2	0.0	1.29	0.57	0.86	0.79	1.65	11450	1285	5	64	1	0	0	logfile
✔	9GZP	51730	2025-09-17	2024-10-04	2.9	2.58	2.84	3.1	0.011	0.93	0.0	0.08	8.57	0.00	2.451	8.84	0.00	0.0	100.0	0.0	-4.08	0.41	0.81	6.41	3.1	0.055	0.60	0.0	0.04	10.14	0.00	2.453	0.51	6.25	0.0	100.0	0.0	-5.31	1.17	0.44	0.84	6.41	2064	276	24	0	12	0	0	logfile
✔	9DUU	47179	2025-09-18	2024-10-04	3.4	3.70	3.43	3.7	0.005	0.77	3.0	0.04	17.76	0.00	1.752	10.56	0.85	4.4	95.4	0.3	0.69	0.64	0.86	1.79	3.7	0.003	0.60	0.0	0.05	17.61	0.00	2.210	7.22	3.07	4.7	95.0	0.3	0.64	0.29	0.65	0.87	1.83	17953	2268	26	0	19	0	0	logfile
✔	9GZN	51728	2025-09-17	2024-10-04	3.5	4.41	3.44	3.7	0.006	1.06	1.0	0.08	17.76	0.01	1.843	6.22	0.62	3.6	96.3	0.2	1.27	0.86	0.77	1.87	3.7	0.003	0.63	0.0	0.04	18.02	0.00	1.829	6.40	1.32	3.0	96.9	0.2	2.01	1.88	0.90	0.85	1.44	11637	1326	6	51	3	0	0	logfile
✔	9GZT	51734	2025-09-17	2024-10-04	2.9	3.05	2.86	3.1	0.007	0.84	0.0	0.05	10.90	0.00	2.597	6.61	0.00	0.0	100.0	0.0	-3.15	0.54	0.86	6.19	3.1	0.048	0.50	0.0	0.04	12.75	0.00	2.304	0.79	3.73	0.2	99.8	0.0	-3.66	1.19	0.47	0.89	5.88	3924	528	36	0	12	0	0	logfile
✔	9GZY	51737	2025-09-17	2024-10-04	3.0	3.12	2.93	3.1	0.008	0.80	0.0	0.05	11.92	0.00	2.446	7.26	0.00	0.0	100.0	0.0	-2.35	0.51	0.81	6.20	3.1	0.058	0.60	0.0	0.04	13.58	0.00	2.413	2.21	0.52	0.0	100.0	0.0	-3.35	0.62	0.44	0.84	6.32	3276	444	36	0	12	0	0	logfile
✔	9GZW	51735	2025-09-17	2024-10-04	2.9	2.96	2.83	3.1	0.008	0.85	0.0	0.06	11.34	0.00	2.673	1.70	4.76	0.0	100.0	0.0	-2.72	0.48	0.86	7.38	3.0	0.070	0.70	0.0	0.05	11.59	0.00	2.206	0.00	0.79	4.2	95.8	0.0	-4.26	0.93	0.49	0.88	7.84	2160	288	24	0	12	0	0	logfile
✔	9DUT	47177	2025-09-18	2024-10-04	3.3	2.16	3.32	1.9	0.004	0.87	1.0	0.05	11.13	0.01	2.255	3.33	0.00	3.9	96.1	0.0	-1.33	0.74	0.73	2.64	2.0	0.004	0.70	0.0	0.04	14.22	0.00	2.537	8.18	2.02	4.9	95.1	0.0	1.19	1.05	0.75	0.75	2.57	19912	2499	7	0	0	0	0	logfile
✔	9GZR	51732	2025-09-18	2024-10-04	2.45	2.23	2.47	1.9	0.003	0.65	0.0	0.04	18.44	0.01	2.186	5.97	3.83	3.5	96.3	0.2	-0.94	0.85	0.86	2.12	1.9	0.005	0.66	0.0	0.05	18.07	0.01	2.520	3.78	3.46	3.7	96.2	0.2	-0.38	0.90	0.86	0.86	2.50	17754	2358	12	0	0	0	0	logfile

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