Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DMY	47020	2025-09-17	2024-09-16	2.8	2.57	2.75	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.004	0.73	0.0	0.05	18.33	0.00	2.628	15.42	2.56	6.0	94.0	0.0	-4.19	1.36	0.45	0.80	3.19	5550	690	5	0	0	0	0	logfile
✔	9JKQ	61567	2025-09-17	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.004	0.59	0.0	0.04	15.89	0.00	2.522	5.64	2.30	3.1	96.9	0.0	1.08	1.24	0.67	0.85	3.08	8386	1055	6	0	1	0	0	logfile
✔	9DN7	47032	2025-09-19	2024-09-16	3.25	3.50	3.38	3.5	0.003	0.58	0.0	0.04	14.43	0.00	1.975	6.17	0.00	3.1	96.9	0.0	0.32	0.71	0.80	2.09	3.5	0.003	0.55	0.0	0.04	15.79	0.00	1.948	7.75	1.10	2.9	97.1	0.0	1.21	0.32	0.71	0.81	1.82	23772	3021	4	0	5	0	0	logfile
✘	9GSZ	51559	2025-09-17	2024-09-16	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6018	383	2	0	1	0	3051	logfile
✔	9DN5	47026	2025-09-19	2024-09-16	3.3	3.59	3.44	3.6	0.003	0.62	0.0	0.04	14.32	0.00	2.148	6.43	0.00	1.5	98.5	0.0	0.29	0.70	0.76	1.63	3.6	0.002	0.54	0.0	0.04	15.73	0.00	2.107	8.34	1.31	1.9	98.1	0.0	1.56	0.95	0.70	0.76	1.48	21000	2679	3	0	5	0	0	logfile
✔	9DN0	47022	2025-09-19	2024-09-16	3.1	3.40	3.16	3.3	0.003	0.58	0.0	0.04	12.72	0.00	2.525	1.58	0.00	2.2	97.8	0.0	0.56	0.62	0.84	3.49	3.3	0.003	0.51	0.0	0.04	13.55	0.00	2.577	1.62	0.93	4.1	95.9	0.0	1.23	0.42	0.61	0.83	2.48	22176	1364	11	0	0	0	11088	logfile
✘	9GSi	51549	2025-09-17	2024-09-16	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7316	933	2	0	4	0	0	logfile
✔	9DMW	47019	2025-09-19	2024-09-16	3.7	4.03	3.80	4.0	0.003	0.70	0.0	0.05	14.81	0.00	2.135	5.16	0.00	2.6	97.4	0.0	-0.63	0.76	0.76	0.91	4.0	0.003	0.59	0.0	0.04	16.33	0.00	2.004	8.00	2.16	2.2	97.8	0.0	1.08	1.21	0.77	0.77	0.80	21212	2729	4	0	5	0	0	logfile
✔	9DN2	47024	2025-09-18	2024-09-16	3.24	3.82	3.50	3.8	0.002	0.61	0.0	0.05	13.02	0.00	2.531	4.07	1.96	4.6	95.4	0.0	-1.02	0.64	0.73	3.03	3.8	0.003	0.66	0.0	0.05	14.85	0.00	2.506	6.33	3.76	6.2	93.8	0.0	-0.77	0.34	0.60	0.71	2.60	17397	2148	27	0	48	0	0	logfile
✔	9GSN	51552	2025-09-19	2024-09-16	2.58	3.80	2.62	3.1	0.009	0.76	0.0	0.04	16.58	0.01	2.086	5.93	0.73	4.0	96.0	0.0	1.02	0.81	0.89	3.38	3.1	0.003	0.68	0.0	0.04	17.02	0.00	2.432	5.61	1.24	3.3	96.6	0.0	1.64	0.37	0.81	0.89	2.93	21574	2695	12	0	7	0	0	logfile
✘	9GSY	51558	2025-09-17	2024-09-16	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7353	941	2	0	3	0	0	logfile
✔	9GSG	51547	2025-09-17	2024-09-15	2.83	3.09	2.90	3.1	0.006	1.22	0.0	0.05	12.45	0.01	1.976	6.81	0.00	4.9	95.0	0.1	-1.03	0.55	0.78	3.02	3.1	0.005	0.67	0.0	0.05	14.86	0.01	1.934	4.96	1.50	4.8	95.2	0.0	0.55	0.35	0.59	0.82	2.65	9093	1153	5	0	8	10	0	logfile
✘	9JK4	61543	2025-09-17	2024-09-15	2.82	3.16	2.96	3.1	0.003	0.57	0.0	0.04	17.97	0.00	2.252	6.64	2.13	3.3	96.7	0.0	0.87	0.55	0.79	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8358	1048	4	0	5	0	0	logfile
✔	9JK8	61547	2025-09-18	2024-09-15	2.6	2.84	2.62	2.9	0.005	0.82	0.0	0.05	9.73	0.01	2.286	13.47	0.00	3.1	96.9	0.0	-1.32	0.64	0.80	3.74	2.9	0.003	0.61	0.0	0.04	14.90	0.00	2.356	9.07	1.61	3.1	96.9	0.0	1.72	1.62	0.66	0.83	3.47	18504	2256	6	0	0	0	0	logfile
✔	9JK5	61544	2025-09-17	2024-09-15	2.92	3.26	2.94	3.2	0.003	0.60	0.0	0.04	18.88	0.01	2.202	6.87	5.95	4.1	95.9	0.0	1.12	0.57	0.80	1.50	3.2	0.003	0.59	0.0	0.04	17.95	0.00	2.444	5.27	2.66	3.8	96.2	0.0	1.55	0.90	0.60	0.82	1.69	8359	1052	2	0	3	0	0	logfile
✘	9GSD	51544	2025-09-17	2024-09-15	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9182	1161	5	0	9	2	0	logfile
✘	9GSF	51546	2025-09-17	2024-09-15	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9195	1156	4	0	9	0	0	logfile
✘	9GSH	51548	2025-09-17	2024-09-15	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9117	1149	4	0	10	0	0	logfile
✔	9JK7	61546	2025-09-18	2024-09-15	2.9	3.10	2.95	3.1	0.005	0.67	0.0	0.05	7.69	0.00	2.218	12.11	0.00	0.8	99.2	0.0	-0.76	0.65	0.79	3.59	3.1	0.004	0.58	0.0	0.04	14.82	0.00	2.599	9.60	1.85	2.2	97.8	0.0	2.05	0.54	0.66	0.82	2.60	17820	2172	6	0	0	0	0	logfile
✔	9JK9	61548	2025-09-18	2024-09-15	2.2	2.48	2.29	2.5	0.006	0.97	0.0	0.05	9.35	0.01	2.249	5.96	0.30	3.0	97.0	0.0	-2.48	0.64	0.78	4.58	2.5	0.004	0.90	0.0	0.04	15.19	0.01	1.721	9.96	2.06	2.8	97.2	0.0	2.00	1.24	0.66	0.82	3.06	18582	2268	6	0	0	0	0	logfile

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