Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DVA	47194	2024-11-19	2024-10-07	3.1	3.30	3.09	3.3	0.003	0.51	0.0	0.04	14.23	0.00	2.077	4.00	0.00	1.2	98.8	0.0	0.25	0.62	0.81	3.20	3.3	0.002	0.57	0.0	0.04	15.80	0.00	2.189	4.36	0.75	1.9	98.1	0.0	0.76	1.09	0.70	0.86	2.37	18529	2354	13	0	10	0	0	logfile
✔	9JUB	61826	2024-11-14	2024-10-07	3.1	3.29	3.10	3.4	0.007	0.79	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	3.3	0.003	0.59	0.0	0.04	13.69	0.00	2.585	6.15	1.67	5.0	95.0	0.0	-0.74	0.59	0.63	0.74	2.65	6479	829	5	0	5	0	0	logfile
✔	9DUU	47179	2024-11-19	2024-10-04	3.4	3.70	3.43	3.7	0.005	0.76	3.0	0.04	17.76	0.00	1.752	10.45	0.85	4.4	95.4	0.3	0.69	0.64	0.86	1.79	3.7	0.005	0.64	0.0	0.05	17.67	0.00	2.145	7.53	3.49	5.3	94.4	0.3	0.43	0.29	0.66	0.87	1.82	17953	2268	26	0	19	0	0	logfile
✔	9DUV	47180	2024-11-19	2024-10-04	3.3	3.73	3.44	3.7	0.006	0.88	0.0	0.05	18.91	0.00	1.752	11.79	1.06	5.0	94.8	0.2	0.26	0.62	0.84	2.05	3.7	0.002	0.61	0.0	0.04	17.96	0.00	2.419	5.85	3.28	3.9	96.1	0.0	0.72	0.30	0.61	0.84	2.00	17947	2268	26	0	19	0	0	logfile
✔	9GYo	51700	2024-11-15	2024-10-02	2.5	2.39	2.45	2.5	0.007	1.20	0.0	0.06	14.41	0.01	2.139	1.55	0.71	2.9	97.1	0.0	-1.22	0.67	0.89	5.17	2.5	0.003	0.58	0.0	0.04	15.88	0.00	2.559	3.40	1.42	2.0	98.0	0.0	1.68	0.84	0.67	0.89	4.12	8087	1028	6	0	4	0	0	logfile
✔	9JSV	61784	2024-11-14	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.26	0.00	2.657	3.79	0.00	4.3	95.7	0.0	-0.83	0.55	0.49	0.93	8.36	4248	272	8	0	0	0	2104	logfile
✔	9JSX	61786	2024-11-14	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.59	0.0	0.05	12.59	0.00	2.670	4.97	0.00	6.2	93.8	0.0	-1.34	0.76	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	9JSW	61785	2024-11-14	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.62	0.0	0.05	13.75	0.00	2.491	0.47	0.46	4.5	95.5	0.0	-1.86	1.55	0.46	0.91	7.33	4304	280	8	0	0	0	2128	logfile
✔	9DTT	47165	2024-11-15	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.7	0.004	0.98	1.0	0.04	20.04	0.01	2.349	14.36	1.62	6.5	93.5	0.0	-1.06	1.19	0.54	0.42	0.74	8274	850	3	67	2	0	0	logfile
✔	9JSU	61783	2024-11-14	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.57	0.0	0.05	12.99	0.00	2.697	1.00	0.00	2.8	97.2	0.0	-3.08	1.14	0.52	0.92	8.41	4040	264	8	0	0	0	2000	logfile
✔	9JST	61782	2024-11-14	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.64	0.0	0.05	12.37	0.00	2.445	0.00	1.85	5.7	94.3	0.0	-1.77	0.73	0.47	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	9JR2	61746	2024-11-15	2024-09-29	2.8	2.91	—	3.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	2.9	0.003	0.59	0.0	0.04	15.60	0.00	2.495	6.52	1.77	3.2	96.8	0.0	1.11	0.64	0.48	0.76	2.78	9418	1225	8	0	1	1	0	logfile
✔	9JR3	61747	2024-11-15	2024-09-29	2.8	2.91	—	2.9	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	2.9	0.003	0.56	0.0	0.04	15.48	0.00	2.534	6.72	3.12	2.7	97.2	0.1	1.15	0.87	0.48	0.76	2.24	9455	1228	9	0	3	1	0	logfile
✔	9JKQ	61567	2024-11-15	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.51	0.0	0.04	15.93	0.00	2.595	5.10	1.97	2.6	97.4	0.0	1.31	1.24	0.67	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	9DMZ	47021	2024-11-14	2024-09-16	2.8	2.58	2.73	2.5	0.003	0.60	0.0	0.06	13.01	0.00	2.275	10.79	0.00	1.5	98.5	0.0	-3.51	0.43	0.77	3.82	2.5	0.003	0.71	0.0	0.06	17.49	0.00	2.547	14.15	1.88	6.3	93.7	0.0	-4.17	1.36	0.45	0.79	3.35	5690	690	10	0	10	0	0	logfile
✔	9DMY	47020	2024-11-14	2024-09-16	2.8	2.57	2.74	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.006	0.78	0.0	0.05	18.42	0.00	2.574	15.88	3.08	8.1	91.9	0.0	-4.26	1.36	0.46	0.80	3.36	5550	690	5	0	0	0	0	logfile
✔	9JKB	61550	2024-11-15	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.005	1.02	1.0	0.04	17.36	0.00	2.376	15.20	2.56	4.5	95.5	0.1	0.41	1.31	0.79	0.82	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JJi	61528	2024-11-15	2024-09-13	3.4	2.52	3.39	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.002	0.60	0.0	0.05	14.70	0.00	2.569	3.65	2.95	1.6	98.4	0.0	-0.42	2.00	0.61	0.81	3.13	10021	1332	4	0	0	0	0	logfile
✔	9GQo	51510	2024-11-14	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.84	0.0	0.04	18.28	0.00	2.023	16.31	2.76	6.2	93.8	0.0	-0.96	0.58	0.81	0.80	0.24	6716	880	2	0	3	0	0	logfile
✘	9JE0	61403	2024-11-14	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	435	2	0	1	1	0	logfile

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