Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FNB	50587	2024-12-27	2024-06-10	2.64	2.64	2.37	2.6	0.008	1.34	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.003	0.63	0.0	0.05	15.89	0.00	2.571	6.15	0.79	6.4	93.6	0.0	-2.31	1.21	0.49	0.92	6.33	4568	540	8	0	16	0	0	logfile
✔	9C6Q	45254	2024-12-29	2024-06-08	3.18	3.22	3.07	3.3	0.005	0.64	0.0	0.04	15.43	0.00	2.139	5.91	0.19	6.6	93.4	0.1	-0.07	0.59	0.70	0.92	3.3	0.004	0.65	0.0	0.04	17.24	0.00	2.523	3.08	1.61	7.6	92.4	0.0	-0.02	0.66	0.67	0.81	2.22	9841	1190	2	12	0	0	0	logfile
✔	9C6J	45248	2024-12-28	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.66	0.0	0.04	24.41	0.01	1.886	7.82	0.00	0.0	0.0	0.0	—	0.31	0.87	0.90	—	8345	0	2	387	21	0	0	logfile
✔	9C6i	45247	2024-12-28	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.008	0.69	0.0	0.04	25.17	0.01	1.854	9.44	0.00	0.0	0.0	0.0	—	1.28	0.93	0.92	—	8471	0	2	393	21	0	0	logfile
✔	8ZTR	60470	2024-12-30	2024-06-07	3.26	3.32	3.25	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.67	0.0	0.04	18.51	0.00	2.467	11.00	3.49	4.5	95.5	0.0	-0.34	1.13	0.62	0.61	0.73	14072	1694	4	0	0	0	0	logfile
✔	9FMU	50570	2024-12-31	2024-06-07	4.46	4.84	4.61	4.6	0.005	1.18	4.0	0.07	13.08	0.01	1.959	20.15	0.00	4.3	95.4	0.3	-1.25	0.80	0.73	—	4.6	0.003	0.72	0.0	0.04	13.56	0.00	1.600	11.50	0.00	3.7	96.3	0.0	-0.28	1.70	0.82	0.79	—	14763	1919	10	0	10	0	0	logfile
✔	9C6K	45249	2024-12-27	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.006	0.67	0.0	0.04	25.57	0.00	1.882	12.96	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	9FMV	50571	2024-12-29	2024-06-07	3.43	2.30	3.33	2.1	0.004	0.65	0.0	0.04	15.23	0.01	2.203	9.66	0.55	3.2	96.8	0.0	1.60	0.75	0.72	1.40	2.1	0.003	0.63	0.0	0.04	16.09	0.00	2.491	7.15	1.94	2.8	97.2	0.0	2.00	0.37	0.75	0.73	1.69	10272	1254	5	0	0	0	0	logfile
✔	8ZTS	60471	2024-12-30	2024-06-07	3.6	2.78	3.52	2.8	0.003	0.61	0.0	0.04	16.79	0.00	2.225	7.43	0.61	2.3	97.7	0.0	1.19	0.63	0.80	2.19	2.7	0.004	0.65	0.0	0.04	17.67	0.00	2.373	6.66	5.41	3.4	96.6	0.0	0.94	0.91	0.63	0.80	1.99	13515	1740	10	0	5	0	0	logfile
✔	8ZSZ	60435	2024-12-27	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.8	0.003	0.68	0.0	0.04	16.54	0.00	1.956	14.47	2.42	3.1	96.9	0.0	1.63	0.74	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	9C5A	45209	2024-12-31	2024-06-06	4.2	3.06	4.22	4.2	0.014	1.48	0.0	0.07	12.26	0.01	1.887	4.97	0.45	3.5	96.3	0.2	0.19	0.66	0.71	—	4.1	0.004	0.71	0.0	0.05	13.46	0.00	1.909	11.29	0.00	3.7	96.3	0.0	0.98	1.70	0.66	0.72	—	15806	1978	10	0	4	0	0	logfile
✔	9C5C	45214	2024-12-29	2024-06-06	3.6	2.97	3.61	3.9	0.004	0.73	0.0	0.04	15.74	0.00	2.202	20.64	0.08	2.7	97.3	0.0	0.79	0.67	0.57	0.91	3.9	0.004	0.89	0.0	0.05	17.37	0.01	2.416	20.16	3.52	3.2	96.8	0.0	0.85	1.13	0.68	0.68	0.72	11364	1429	4	0	0	0	0	logfile
✔	9C58	45207	2024-12-28	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.003	0.65	0.0	0.04	7.29	0.00	1.986	1.12	0.00	8.3	91.7	0.0	0.01	1.60	0.75	0.72	—	7954	1590	6	0	2	0	0	logfile
✔	9C5Q	45218	2024-12-30	2024-06-06	3.1	3.69	3.23	3.5	0.002	0.57	0.0	0.04	19.49	0.00	2.031	7.40	0.65	8.4	91.5	0.1	-2.00	0.76	0.81	1.49	3.5	0.003	0.61	0.0	0.04	19.61	0.00	2.521	5.60	4.28	10.1	89.8	0.1	-1.22	0.39	0.72	0.77	1.62	12324	1550	4	28	0	0	0	logfile
✔	8ZRT	60404	2024-12-27	2024-06-05	3.62	3.79	3.44	3.8	0.003	0.69	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.72	0.0	0.04	16.69	0.01	2.580	12.92	8.06	4.1	95.9	0.0	1.10	0.32	0.47	0.72	1.79	2322	303	2	0	0	0	0	logfile
✔	8ZSB	60410	2024-12-27	2024-06-05	3.26	3.46	3.10	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.003	0.56	0.0	0.04	16.03	0.00	1.877	9.41	0.95	3.3	96.7	0.0	2.63	0.51	0.60	0.82	1.93	4798	614	4	0	2	0	0	logfile
✔	9FLY	50543	2024-12-26	2024-06-05	3.7	4.03	3.86	4.0	0.018	1.56	26.0	0.08	9.82	0.01	1.048	9.93	0.00	2.8	97.2	0.0	0.76	0.79	0.85	1.90	4.0	0.003	0.63	0.0	0.04	12.48	0.00	2.526	5.75	1.67	2.8	97.2	0.0	0.15	0.66	0.82	0.88	2.70	43463	6013	7	0	0	0	0	logfile
✔	9FLP	50537	2024-12-26	2024-06-05	3.8	4.19	3.92	4.1	0.017	1.53	42.0	0.07	9.13	0.02	1.546	6.30	0.00	1.5	98.5	0.0	0.95	0.82	0.84	1.74	4.1	0.003	0.60	0.0	0.04	11.29	0.00	2.576	4.89	1.17	2.6	97.4	0.0	0.88	1.81	0.84	0.88	1.95	45101	6384	7	0	0	0	0	logfile
✔	8ZSJ	60417	2024-12-28	2024-06-05	2.8	3.25	2.87	3.1	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.004	0.61	0.0	0.04	15.64	0.00	2.485	7.05	1.27	2.7	97.3	0.0	1.02	1.00	0.62	0.85	3.38	8118	1035	6	0	1	4	0	logfile
✔	9FLU	50539	2024-12-31	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.030	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.003	0.54	0.0	0.05	10.95	0.00	2.345	4.63	3.34	1.5	98.5	0.0	1.74	1.21	0.70	0.84	3.78	16520	2324	7	0	0	0	0	logfile

• ← previous
• Page 10 of 436
• next →