Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UBV	42106	2024-12-27	2023-09-25	4.1	4.24	4.04	4.1	0.005	1.00	0.0	0.05	17.20	0.00	1.956	24.13	3.88	16.0	83.9	0.1	-3.69	0.64	0.57	—	4.1	0.003	0.81	0.0	0.05	17.08	0.00	2.402	14.78	3.75	12.3	87.7	0.0	-3.20	1.24	0.65	0.55	—	6603	852	4	0	0	0	0	logfile
✘	8UC7	42116	2024-12-31	2023-09-25	2.9	3.13	2.84	3.1	0.015	1.75	4.0	0.09	13.19	0.01	2.560	2.24	0.00	1.7	98.3	0.0	-0.57	0.61	0.79	6.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14840	1936	8	0	16	0	0	logfile
✔	8WJG	37579	2024-12-27	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	3.3	0.003	0.70	0.0	0.04	16.31	0.00	2.591	9.11	2.03	2.1	97.9	0.0	1.85	0.44	0.50	0.74	2.39	3952	533	1	0	0	0	0	logfile
✘	8WiZ	37573	2024-12-31	2023-09-25	2.2	2.38	2.23	2.4	0.015	1.78	6.0	0.10	20.31	0.03	0.000	13.55	10.83	2.8	97.2	0.0	-1.91	0.59	0.73	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15306	1722	36	0	18	1068	0	logfile
✔	8UC0	42111	2024-12-27	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.003	0.52	0.0	0.03	13.78	0.00	2.451	1.88	1.12	2.6	97.4	0.0	3.48	0.91	0.63	0.88	3.66	6861	422	2	0	3	102	3375	logfile
✘	8WJ1	37575	2024-12-30	2023-09-25	2.27	2.40	2.29	2.5	0.015	1.77	12.0	0.10	18.98	0.03	0.000	10.88	14.10	1.1	98.6	0.4	-1.89	0.56	0.71	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14196	1698	36	0	24	738	0	logfile
✔	8QN4	18507	2024-12-30	2023-09-25	3.36	3.57	3.36	3.6	0.017	2.08	13.0	0.12	14.78	0.02	2.210	5.85	0.76	5.6	94.2	0.1	-2.00	0.53	0.46	0.71	3.5	0.003	0.79	0.0	0.05	17.00	0.00	2.461	12.00	2.77	3.8	96.2	0.0	-1.04	1.65	0.68	0.72	1.82	13608	1742	6	0	0	0	0	logfile
✘	8WiY	37572	2024-12-31	2023-09-25	2.31	2.56	2.31	2.6	0.014	1.72	0.0	0.10	19.56	0.02	0.000	10.57	11.25	2.5	97.5	0.0	-1.41	0.56	0.70	4.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15486	1722	36	0	24	1248	0	logfile
✔	8UBY	42109	2024-12-27	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.003	0.49	0.0	0.03	14.83	0.00	2.573	3.64	1.13	1.9	98.1	0.0	3.96	0.89	0.60	0.86	3.25	6756	419	2	0	4	46	3345	logfile
✔	8UC3	42114	2024-12-27	2023-09-25	2.78	3.15	2.78	3.1	0.005	0.85	0.0	0.05	16.43	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.63	0.0	0.04	16.98	0.01	2.621	6.25	2.67	2.2	97.8	0.0	1.59	1.03	0.51	0.74	1.60	4304	556	6	0	2	0	0	logfile
✘	8WJ2	37576	2024-12-31	2023-09-25	2.35	2.51	2.35	2.6	0.015	1.95	12.0	0.10	18.14	0.03	0.000	8.58	11.26	2.1	97.5	0.4	-2.08	0.58	0.73	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14844	1722	36	0	12	1176	0	logfile
✔	8UC8	42117	2024-12-31	2023-09-25	3.0	3.11	2.87	3.1	0.013	1.84	0.0	0.09	15.10	0.01	2.197	5.40	0.60	3.8	96.2	0.0	-1.40	0.59	0.71	5.06	3.1	0.003	0.56	0.0	0.04	15.32	0.00	2.618	8.94	1.56	1.8	98.2	0.0	1.68	1.21	0.73	0.82	3.79	14804	1936	8	0	16	0	0	logfile
✔	8UBZ	42110	2024-12-27	2023-09-25	3.02	3.57	3.02	3.5	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.003	0.52	0.0	0.03	15.18	0.00	2.502	7.34	1.71	2.7	97.3	0.0	3.36	0.77	0.60	0.83	2.08	6674	415	2	0	4	26	3315	logfile
✔	8QMP	18506	2024-12-30	2023-09-25	3.3	3.53	3.34	3.6	0.003	0.50	0.0	0.04	16.72	0.00	1.392	9.71	0.00	4.2	95.8	0.0	0.47	0.61	0.72	0.91	3.6	0.003	0.53	0.0	0.04	17.06	0.00	1.973	7.14	2.24	3.9	96.1	0.0	0.33	0.22	0.60	0.71	0.91	13998	913	2	0	2	0	7087	logfile
✘	8WiX	37571	2024-12-31	2023-09-25	2.29	2.42	2.29	2.4	0.015	1.75	0.0	0.10	18.64	0.02	0.000	8.78	9.17	2.8	96.8	0.4	-1.63	0.58	0.74	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14940	1722	36	0	24	702	0	logfile
✘	8UBX	42108	2024-12-27	2023-09-25	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6757	419	2	0	4	68	3328	logfile
✔	8UC1	42112	2024-12-29	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.57	0.0	0.04	15.01	0.00	2.584	8.55	2.56	3.6	96.2	0.2	1.88	0.39	0.59	0.79	2.22	10310	1336	4	0	2	0	0	logfile
✘	8UBW	42107	2024-12-27	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	8WJ0	37574	2024-12-30	2023-09-25	2.24	2.40	2.24	2.5	0.015	1.72	18.0	0.10	18.81	0.03	0.000	12.28	13.66	1.1	98.9	0.0	-1.94	0.57	0.71	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14370	1698	36	0	24	888	0	logfile
✔	8QN7	18509	2024-12-27	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile

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