Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UBA	42080	2024-12-29	2023-09-22	3.2	3.46	3.22	3.4	0.011	1.25	0.0	0.10	23.38	0.01	2.202	28.19	7.20	8.2	89.7	2.0	-3.80	0.72	0.77	2.89	3.4	0.004	0.71	0.0	0.04	22.01	0.01	2.374	16.06	2.80	5.9	93.6	0.6	0.10	0.82	0.75	0.78	2.01	10299	897	9	143	0	0	0	logfile
✔	8WH8	37533	2024-12-30	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.003	0.64	0.0	0.03	25.58	0.00	2.343	9.10	1.64	4.4	95.5	0.1	1.61	0.97	0.84	0.83	0.79	14304	1149	12	250	1	0	0	logfile
✔	8UB9	42079	2024-12-29	2023-09-22	3.07	3.37	3.15	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.71	0.0	0.04	22.50	0.01	2.173	14.73	2.28	6.0	93.5	0.5	-0.05	0.82	0.71	0.77	2.07	10370	893	9	148	0	0	0	logfile
✔	8WH9	37535	2024-12-31	2023-09-22	3.31	3.58	3.37	3.4	0.009	1.19	0.0	0.07	25.84	0.01	2.216	13.31	1.08	7.4	91.7	0.9	-2.77	0.81	0.72	0.93	3.3	0.003	0.64	0.0	0.04	26.03	0.00	2.497	7.39	1.77	5.5	94.4	0.1	1.39	1.93	0.87	0.86	1.07	15328	1188	12	284	2	0	0	logfile
✔	8WGR	37515	2024-12-28	2023-09-22	2.75	3.15	2.82	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.57	0.0	0.04	17.08	0.00	2.474	2.94	1.08	3.1	96.9	0.0	1.66	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile
✔	8UAH	42064	2024-12-27	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.005	1.41	1.0	0.05	20.11	0.00	2.229	9.47	5.85	14.5	85.0	0.4	-3.92	0.88	0.73	0.85	2.03	3534	451	2	0	0	0	0	logfile
✔	8WGE	37511	2024-12-30	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	3.2	0.003	0.53	0.0	0.04	16.20	0.00	2.558	6.36	2.09	2.7	97.3	0.0	1.19	0.28	0.67	0.86	2.36	13515	1740	10	0	5	0	0	logfile
✔	8QMA	18496	2024-12-28	2023-09-21	3.5	2.52	—	1.8	0.004	0.69	0.0	0.05	13.65	0.01	1.997	5.82	0.74	4.0	95.7	0.2	-1.28	0.80	0.74	3.41	1.7	0.005	0.64	0.0	0.04	15.15	0.00	1.855	7.55	1.53	3.0	96.9	0.0	0.72	1.19	0.82	0.78	2.90	52064	6421	23	0	4	0	0	logfile
✘	8WG9	37506	2024-12-30	2023-09-20	4.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11806	1511	3	0	1	0	0	logfile
✘	8UA3	42049	2024-12-27	2023-09-20	3.8	4.06	3.83	4.0	0.007	0.92	0.0	0.05	18.05	0.01	2.166	12.30	0.60	7.7	91.8	0.5	-2.26	0.68	0.80	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4450	570	3	0	0	0	0	logfile
✔	8WG8	37505	2024-12-28	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.69	0.0	0.04	15.83	0.00	2.464	6.15	2.60	3.9	96.1	0.0	0.78	0.50	0.63	0.80	2.53	8043	1037	6	0	0	0	0	logfile
✔	8WFS	37498	2024-12-28	2023-09-20	3.36	2.57	3.39	2.2	0.005	0.87	0.0	0.05	19.14	0.01	2.261	13.55	0.94	5.8	94.2	0.0	-1.77	0.73	0.75	1.67	2.2	0.004	0.81	0.0	0.05	16.05	0.01	2.461	11.47	4.87	7.2	92.8	0.0	-1.43	0.28	0.75	0.78	1.51	6274	808	13	0	14	0	0	logfile
✔	8WG7	37504	2024-12-28	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.006	1.04	2.0	0.06	16.07	0.01	2.229	7.88	1.74	3.6	96.4	0.0	1.59	0.44	0.65	0.78	2.24	8123	1030	5	0	0	0	0	logfile
✔	8UAD	42060	2024-12-30	2023-09-20	2.77	2.99	2.86	3.0	0.009	1.03	0.0	0.06	20.43	0.01	2.216	4.24	0.71	3.6	96.4	0.0	-0.82	0.72	0.79	3.97	3.0	0.003	0.66	0.0	0.04	14.49	0.00	2.476	2.32	1.34	2.4	97.6	0.0	0.38	0.97	0.63	0.80	3.42	12318	1533	24	0	48	0	0	logfile
✔	8WG3	37501	2024-12-27	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.65	0.0	0.04	16.09	0.00	2.367	6.47	2.68	3.2	96.8	0.0	1.56	1.70	0.55	0.76	0.95	4585	548	2	0	4	0	0	logfile
✔	8UA7	42053	2024-12-29	2023-09-20	3.3	3.66	3.33	3.4	0.004	0.67	0.0	0.04	28.72	0.01	2.099	12.79	5.54	10.6	89.0	0.4	-1.00	0.78	0.77	0.81	3.4	0.004	0.88	1.0	0.04	28.76	0.01	2.066	10.74	8.39	10.4	89.0	0.7	-0.38	1.03	0.78	0.77	0.87	11263	778	10	260	0	0	0	logfile
✔	8U9Y	42041	2024-12-30	2023-09-20	3.7	4.00	3.73	3.9	0.005	0.82	0.0	0.07	23.72	0.01	2.079	7.40	0.14	9.6	90.4	0.0	-0.76	0.72	0.75	2.67	3.9	0.003	0.68	0.0	0.04	16.97	0.01	2.263	6.41	2.93	7.8	92.1	0.1	-0.42	1.65	0.68	0.73	2.00	12951	881	10	0	14	0	6188	logfile
✔	8QLo	18486	2024-12-28	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.004	0.67	0.0	0.04	16.63	0.00	2.412	8.25	3.18	2.6	97.4	0.0	0.49	0.88	0.77	0.80	2.82	7282	892	2	0	0	0	0	logfile
✔	8UAF	42062	2024-12-30	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.60	0.0	0.04	16.93	0.00	1.949	4.73	1.60	5.0	95.0	0.0	-0.46	0.44	0.74	0.73	1.72	64015	8033	35	0	22	0	0	logfile
✔	8WG5	37503	2024-12-31	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.005	0.70	0.0	0.04	26.95	0.00	2.079	10.80	2.42	2.5	97.5	0.0	1.47	1.58	0.91	0.87	1.21	14965	1135	12	294	0	0	0	logfile

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