Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CE0	45489	2024-12-30	2024-06-25	3.97	5.06	4.02	4.0	0.004	0.69	0.0	0.04	15.09	0.01	1.931	16.34	0.15	6.3	93.6	0.1	-1.00	0.87	0.70	0.27	4.0	0.005	0.86	0.0	0.05	16.15	0.01	2.148	17.10	1.99	5.1	94.9	0.0	-0.17	1.78	0.91	0.82	0.29	12551	1568	4	0	4	0	0	logfile
✔	9FTJ	50747	2024-12-30	2024-06-24	4.0	4.14	3.87	4.0	0.007	0.64	0.0	0.05	15.42	0.00	2.304	5.97	0.00	5.1	94.9	0.0	-0.50	0.75	0.88	—	4.0	0.004	0.59	0.0	0.04	16.05	0.00	2.565	5.08	5.00	3.7	96.3	0.0	0.46	0.92	0.74	0.87	—	12045	1570	5	0	0	0	0	logfile
✔	9CD9	45464	2024-12-29	2024-06-24	3.2	3.12	3.07	3.3	0.006	0.53	0.0	0.05	15.89	0.00	2.295	9.25	1.10	1.4	98.6	0.0	-3.04	0.72	0.90	5.83	3.3	0.003	0.51	0.0	0.05	16.88	0.00	2.564	4.18	1.93	1.3	98.7	0.0	-3.03	0.45	0.66	0.90	5.80	10989	1606	22	0	0	0	0	logfile
✘	9CDA	45465	2024-12-29	2024-06-24	3.3	3.08	3.30	3.3	0.006	0.59	0.0	0.05	18.16	0.00	1.993	7.61	1.85	5.1	94.9	0.0	-2.65	0.60	0.87	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9855	1440	18	0	0	0	0	logfile
✔	9iJE	60629	2024-12-28	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.003	0.55	0.0	0.04	16.72	0.00	2.562	2.71	2.86	2.2	97.8	0.0	1.57	0.37	0.60	0.80	3.36	9340	1227	7	0	1	1	0	logfile
✔	9iJD	60628	2024-12-28	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.002	0.58	0.0	0.04	17.63	0.00	2.473	6.31	3.05	2.8	97.2	0.0	0.82	1.15	0.56	0.74	2.12	9371	1227	7	0	1	0	0	logfile
✔	9iJ1	60612	2024-12-27	2024-06-21	3.2	3.65	3.55	3.7	0.005	1.08	0.0	0.06	20.53	0.01	2.099	7.65	0.88	7.6	92.4	0.0	-2.66	0.59	0.60	1.31	3.7	0.003	0.78	0.0	0.05	20.59	0.01	2.106	17.79	5.86	8.0	92.0	0.0	-1.96	0.46	0.60	0.62	0.72	7056	755	4	47	1	0	0	logfile
✔	9iJ5	60616	2024-12-27	2024-06-21	2.8	3.11	2.96	3.1	0.008	1.16	1.0	0.06	19.97	0.01	2.267	7.73	1.02	6.3	93.7	0.0	-2.72	0.65	0.69	1.49	3.1	0.004	0.74	0.0	0.05	19.76	0.00	2.267	15.59	4.10	5.3	94.7	0.0	-1.09	0.40	0.60	0.68	1.59	7139	755	4	51	1	0	0	logfile
✔	9iJ3	60614	2024-12-27	2024-06-21	2.6	2.95	2.79	3.0	0.005	0.99	0.0	0.05	20.45	0.01	1.968	11.06	1.20	8.8	91.1	0.1	-2.04	0.59	0.61	1.17	3.0	0.005	0.77	0.0	0.05	20.47	0.01	2.102	18.06	2.40	9.9	90.0	0.1	-1.45	0.47	0.56	0.65	1.51	7005	738	4	51	1	0	0	logfile
✔	9iJ2	60613	2024-12-27	2024-06-21	3.9	4.21	4.03	4.2	0.005	1.13	0.0	0.06	22.17	0.01	2.273	9.61	0.32	9.8	90.2	0.0	-3.30	0.59	0.49	1.13	4.1	0.003	0.78	0.0	0.04	21.92	0.01	2.533	19.64	5.06	10.1	89.6	0.3	-2.76	1.33	0.61	0.52	0.65	3729	351	3	43	0	0	0	logfile
✔	9iJ0	60611	2024-12-27	2024-06-21	3.2	3.59	3.44	3.6	0.006	0.85	0.0	0.05	17.12	0.01	1.758	4.56	0.00	5.8	93.9	0.3	-0.87	0.67	0.73	2.80	3.6	0.004	0.69	0.0	0.05	17.82	0.00	2.015	6.31	1.60	6.0	93.9	0.1	-0.02	1.35	0.61	0.74	2.70	6667	758	4	27	2	0	0	logfile
✔	9iiY	60609	2024-12-27	2024-06-21	3.0	3.31	3.14	3.4	0.003	0.79	0.0	0.08	21.55	0.00	2.103	19.24	0.36	9.0	91.0	0.0	-3.11	0.48	0.46	0.64	3.4	0.003	0.91	0.0	0.08	21.74	0.00	2.335	19.42	4.45	11.3	88.7	0.0	-3.04	0.52	0.52	0.53	0.93	5943	620	3	43	0	0	0	logfile
✔	9iiZ	60610	2024-12-27	2024-06-21	3.8	4.41	3.87	4.3	0.005	1.23	0.0	0.07	22.77	0.01	2.256	10.55	0.59	9.4	90.6	0.0	-3.44	0.71	0.60	-0.85	4.3	0.004	0.85	0.0	0.04	22.59	0.00	2.512	22.79	4.72	9.1	90.6	0.3	-2.17	1.12	0.72	0.63	0.33	4080	377	3	49	0	0	0	logfile
✔	9CBZ	45429	2024-12-31	2024-06-20	2.86	2.52	2.85	2.9	0.005	0.64	0.0	0.05	13.20	0.00	1.462	6.02	0.00	2.8	97.2	0.0	1.11	0.53	0.60	0.52	2.8	0.003	0.55	0.0	0.04	15.73	0.00	2.498	6.70	1.06	2.5	97.5	0.0	1.67	1.46	0.70	0.90	3.57	15424	1892	8	0	8	0	0	logfile
✔	9CBU	42499	2024-12-30	2024-06-20	2.2	2.61	2.34	2.6	0.014	1.85	0.0	0.09	23.00	0.05	1.831	0.24	0.00	0.0	0.0	0.0	—	0.58	0.72	—	2.6	0.005	0.64	0.0	0.04	24.03	0.01	1.761	5.54	0.00	0.0	0.0	0.0	—	1.24	0.65	0.79	—	12600	0	2	387	22	134	4161	logfile
✔	9CBX	42499	2024-12-30	2024-06-20	2.2	2.61	2.34	2.6	0.014	1.85	0.0	0.09	23.00	0.05	1.797	0.24	0.00	0.0	0.0	0.0	—	0.58	0.71	—	2.6	0.005	0.64	0.0	0.04	24.06	0.01	1.759	5.52	0.00	0.0	0.0	0.0	—	1.24	0.62	0.76	—	12778	0	2	387	54	280	4161	logfile
✔	8ZYQ	60576	2024-12-27	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.54	0.0	0.04	16.19	0.00	2.535	5.53	2.28	2.7	97.3	0.0	1.80	0.36	0.55	0.83	2.58	6329	796	5	0	1	0	0	logfile
✔	8ZYN	60573	2024-12-27	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.72	0.00	2.627	5.49	3.03	2.5	97.5	0.0	1.36	0.33	0.58	0.83	1.42	6640	840	4	0	0	0	0	logfile
✔	8ZYo	60574	2024-12-27	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.004	0.58	0.0	0.04	16.49	0.00	2.540	6.82	4.18	3.1	96.9	0.0	1.94	0.31	0.58	0.85	1.94	6238	785	5	0	1	0	0	logfile
✘	8ZYC	60561	2024-12-27	2024-06-17	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7058	728	6	73	2	0	0	logfile

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