Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W5J	37294	2024-12-28	2023-08-27	4.4	4.87	4.36	4.4	0.002	0.63	0.0	0.04	12.49	0.01	2.174	13.63	0.00	2.1	97.9	0.0	1.07	0.56	0.79	—	4.4	0.004	0.71	0.0	0.04	13.24	0.00	2.392	15.21	0.00	3.2	96.8	0.0	0.32	0.48	0.57	0.81	—	7356	942	11	0	1	0	0	logfile
✔	8TZQ	41766	2024-12-28	2023-08-27	3.2	3.93	3.21	3.7	0.003	0.55	0.0	0.04	9.08	0.01	2.226	6.68	0.43	2.3	97.7	0.0	1.04	0.73	0.82	3.31	3.7	0.003	0.66	0.0	0.04	13.89	0.00	2.519	6.38	1.83	2.5	97.5	0.0	0.79	0.85	0.72	0.84	2.73	8618	1117	6	0	1	0	0	logfile
✔	8TZJ	41760	2024-12-30	2023-08-27	3.51	3.99	3.46	3.9	0.004	0.67	0.0	0.04	12.13	0.00	2.229	2.62	0.15	1.8	98.2	0.0	2.16	0.65	0.77	1.68	3.9	0.004	0.60	0.0	0.04	15.19	0.00	1.832	4.86	0.59	2.5	97.5	0.0	2.31	0.88	0.70	0.81	1.28	13346	846	6	0	4	0	6772	logfile
✔	8TZE	41756	2024-12-27	2023-08-26	2.9	3.19	2.95	3.2	0.007	0.76	0.0	0.05	14.56	0.02	2.140	7.97	1.30	3.8	95.9	0.3	0.15	0.49	0.75	3.59	3.2	0.006	0.60	0.0	0.05	15.48	0.01	2.426	5.42	1.30	3.7	96.2	0.1	0.20	0.98	0.50	0.76	3.65	6255	787	2	0	1	0	0	logfile
✔	8TZB	41753	2024-12-28	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	14.68	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.003	0.57	0.0	0.04	15.09	0.00	2.417	8.54	2.25	4.9	95.0	0.1	-0.25	0.18	0.75	0.72	2.15	7283	1012	3	0	1	0	0	logfile
✔	8TYW	41729	2024-12-28	2023-08-26	3.43	2.47	3.40	2.2	0.005	0.93	0.0	0.05	18.20	0.01	2.297	7.31	0.59	3.5	96.5	0.0	-1.15	0.76	0.78	1.48	2.2	0.003	0.63	0.0	0.04	18.46	0.00	2.545	9.03	5.92	2.8	97.2	0.0	0.77	0.32	0.76	0.79	1.48	7938	1026	5	0	0	0	0	logfile
✔	8TZD	41755	2024-12-30	2023-08-26	3.2	3.53	3.30	3.6	0.009	0.58	0.0	0.04	13.90	0.00	2.183	3.72	0.32	1.9	98.1	0.0	2.98	0.61	0.80	2.33	3.6	0.003	0.50	0.0	0.04	15.15	0.00	2.438	3.97	1.69	1.6	98.4	0.0	3.46	1.16	0.66	0.82	1.69	12175	1587	6	0	4	0	0	logfile
✘	8QC1	18325	2024-12-29	2023-08-25	2.5	2.43	2.49	2.5	0.004	0.57	0.0	0.04	18.50	0.00	1.851	2.92	0.45	2.1	97.9	0.0	0.76	0.71	0.90	5.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9431	1118	6	0	15	115	0	logfile
✔	8QCB	18328	2024-12-29	2023-08-25	2.8	2.99	2.84	3.0	0.002	0.45	0.0	0.04	12.78	0.00	2.288	3.19	0.00	2.5	97.5	0.0	1.02	0.61	0.76	3.54	3.0	0.002	0.50	0.0	0.04	15.52	0.00	2.484	3.42	1.97	2.2	97.8	0.0	1.23	0.90	0.75	0.88	2.83	11423	1506	5	0	0	0	0	logfile
✘	8QBY	18324	2024-12-26	2023-08-25	2.3	2.35	2.35	2.3	0.006	0.62	0.0	1.08	17.26	0.01	1.938	2.67	0.34	2.3	97.7	0.0	0.27	0.73	0.89	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	42542	5133	50	0	49	1080	0	logfile
✔	8TYQ	41728	2024-12-28	2023-08-25	2.99	2.37	—	3.2	0.007	0.98	3.0	0.05	14.46	0.01	2.195	13.81	0.53	3.7	96.1	0.2	-0.16	0.71	0.64	1.66	3.2	0.003	0.74	0.0	0.04	16.69	0.01	2.427	10.20	0.74	3.8	96.2	0.0	-0.16	1.22	0.77	0.76	2.26	8529	1069	3	0	1	0	0	logfile
✔	8TYE	41715	2024-12-29	2023-08-25	3.8	4.08	3.83	4.0	0.006	1.02	0.0	0.06	16.15	0.02	2.202	5.86	0.00	3.7	96.3	0.0	-1.26	0.70	0.76	2.53	4.0	0.005	0.89	0.0	0.05	15.34	0.00	2.417	12.73	2.00	4.9	95.1	0.0	-0.57	0.56	0.72	0.80	2.33	9921	994	33	0	279	0	0	logfile
✔	8QBN	18316	2024-12-27	2023-08-24	3.2	3.27	3.06	3.2	0.004	0.59	0.0	0.05	14.30	0.00	2.206	4.37	0.27	4.3	95.7	0.0	-0.65	0.84	0.87	3.32	3.3	0.003	0.52	0.0	0.04	15.28	0.00	2.578	3.06	1.73	4.6	95.4	0.0	-0.31	0.21	0.85	0.89	3.27	7021	897	6	0	3	0	0	logfile
✔	8TXW	41707	2024-12-30	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	2.123	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.004	0.58	0.0	0.03	27.39	0.00	2.126	6.74	1.53	2.4	97.5	0.1	2.55	0.33	0.87	0.89	0.57	12835	857	12	294	0	0	0	logfile
✔	8TXQ	41703	2024-12-28	2023-08-24	3.4	3.60	3.38	3.7	0.004	0.69	0.0	0.05	15.34	0.00	2.010	6.55	0.41	10.2	89.8	0.0	-2.70	0.64	0.72	2.81	3.7	0.004	0.62	0.0	0.05	15.75	0.00	2.289	6.55	4.69	11.8	88.2	0.0	-2.55	0.37	0.64	0.75	2.61	8851	610	4	0	0	0	4305	logfile
✔	8W4F	36904	2024-12-30	2023-08-24	4.2	9.65	3.95	8.2	0.026	2.68	41.0	0.12	11.76	0.01	2.158	1.62	0.12	6.5	92.3	1.2	-1.80	0.86	0.56	—	4.0	0.004	0.76	0.0	0.04	12.86	0.00	2.195	16.05	0.00	11.3	88.3	0.4	-2.71	1.13	0.90	0.75	—	60429	3951	6	0	0	0	29841	logfile
✔	8TY6	41711	2024-12-29	2023-08-24	3.3	3.52	3.45	3.5	0.002	0.44	0.0	0.04	11.55	0.00	2.144	4.89	2.71	2.1	97.9	0.0	2.36	0.74	0.81	2.58	3.5	0.003	0.58	0.0	0.04	15.26	0.01	2.544	6.40	1.45	1.8	98.2	0.0	2.34	0.61	0.72	0.80	2.24	9678	1260	6	0	0	0	0	logfile
✔	8TXV	41706	2024-12-30	2023-08-24	3.8	4.05	3.67	3.9	0.003	0.56	0.0	0.03	26.65	0.00	2.151	7.46	0.14	2.3	97.7	0.0	2.47	0.85	0.86	1.11	3.9	0.003	0.60	0.0	0.03	27.16	0.00	2.139	8.28	2.64	2.7	97.3	0.0	2.61	0.45	0.87	0.88	1.25	12836	857	12	294	0	0	0	logfile
✔	8TXX	41708	2024-12-30	2023-08-24	3.7	3.96	3.60	3.8	0.004	0.55	0.0	0.03	26.69	0.00	2.074	8.69	0.00	2.9	97.1	0.0	2.62	0.86	0.88	1.17	3.8	0.004	0.59	0.0	0.03	27.50	0.00	2.069	7.59	2.58	3.1	96.9	0.0	2.54	1.39	0.87	0.88	0.96	12969	873	12	294	0	0	0	logfile
✔	8TYC	41713	2024-12-29	2023-08-24	3.3	3.96	3.46	3.7	0.021	1.75	0.0	0.15	16.24	0.02	2.365	2.90	0.00	3.1	96.9	0.0	0.44	0.75	0.78	2.83	3.7	0.003	0.91	0.0	0.05	13.98	0.00	2.194	8.01	2.00	3.5	96.5	0.0	0.61	1.68	0.74	0.81	2.77	10628	1058	39	0	295	0	0	logfile

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