Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8GFX	29987	2025-02-11	2023-03-08	3.0	3.31	3.10	3.3	0.004	0.53	0.0	0.04	13.47	0.00	2.248	3.22	0.00	2.2	97.8	0.0	0.67	0.64	0.88	4.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6725	896	6	0	2	1	0	logfile
✘	8iKG	35511	2025-02-12	2023-02-28	3.4	3.67	3.39	3.7	0.005	0.71	1.0	0.04	13.86	0.00	2.225	11.28	0.34	4.7	95.3	0.0	-0.19	0.63	0.76	1.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8456	1098	6	0	1	0	0	logfile
✘	8iD9	35360	2025-02-12	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7996	1095	6	0	1	0	0	logfile
✘	8CHB	16659	2025-02-13	2023-02-07	3.14	3.61	3.17	3.5	0.012	1.75	2.0	0.09	15.26	0.01	2.512	3.80	1.64	3.6	96.4	0.0	-1.52	0.72	0.77	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8916	1158	2	0	0	0	0	logfile
✘	8CE7	16600	2025-02-14	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8i6Q	35203	2025-02-11	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3975	810	4	0	0	0	0	logfile
✘	8CAQ	16532	2025-02-10	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2870	375	5	0	0	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8FU6	29453	2025-02-13	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8834	1112	6	0	0	0	0	logfile
✘	8FQ3	29376	2025-02-12	2023-01-05	3.17	2.87	3.07	3.0	0.015	0.70	0.0	0.06	17.77	0.00	2.185	8.98	0.00	2.7	97.3	0.0	-0.25	0.56	0.74	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8386	1064	16	0	4	4	0	logfile
✘	8HTT	35017	2025-02-11	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile
✘	8C07	16356	2025-02-11	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4974	644	5	0	1	0	0	logfile
✘	8BWP	16293	2025-02-14	2022-12-07	3.6	3.85	3.55	3.8	0.011	0.90	1.0	0.06	12.54	0.01	2.213	4.13	0.48	2.9	97.1	0.0	-1.51	0.68	0.83	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9578	1195	2	0	1	0	0	logfile
✘	8BVS	16270	2025-02-11	2022-12-05	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4799	617	4	1	1	0	0	logfile
✘	8F7W	28911	2025-02-13	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.29	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9087	1145	7	0	5	0	0	logfile
✘	8F7E	28904	2025-02-11	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6642	814	2	0	0	0	0	logfile
✘	8F6R	28889	2025-02-14	2022-11-17	4.0	4.17	3.97	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1314	6	0	0	0	0	logfile
✘	8F6J	28885	2025-02-14	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10472	1366	8	0	8	0	0	logfile
✘	8HG0	34730	2025-02-11	2022-11-13	3.51	4.44	3.51	3.7	0.003	0.61	0.0	0.04	17.58	0.00	2.098	7.93	1.15	1.8	98.1	0.1	0.06	0.85	0.80	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6470	790	4	0	4	0	0	logfile
✘	8H9K	34570	2025-02-11	2022-10-25	3.51	3.83	3.65	3.7	0.006	0.91	0.0	0.05	15.47	0.01	2.169	13.42	0.00	5.8	94.2	0.0	-2.34	0.39	0.77	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3381	421	3	0	0	0	0	logfile

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