Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7T2G	25612	2025-02-12	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6922	898	5	0	3	8	0	logfile
✘	7T2H	25613	2025-02-13	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.53	0.0	0.04	14.19	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8677	1119	6	0	1	0	0	logfile
✘	7W2Z	32268	2025-02-13	2021-11-24	2.8	3.01	—	3.0	0.009	1.13	1.0	0.06	14.81	0.01	2.078	8.01	0.82	3.6	96.3	0.1	-4.01	0.60	0.80	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9080	1154	8	0	3	0	0	logfile
✘	7SWP	25478	2025-02-11	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile
✘	7STX	25438	2025-02-13	2021-11-15	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8611	1049	5	0	30	0	0	logfile
✘	7VV3	32136	2025-02-13	2021-11-04	2.97	3.10	—	3.0	0.009	1.26	0.0	0.07	13.10	0.01	1.600	7.63	0.75	3.3	96.7	0.0	-1.72	0.73	0.85	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8633	1105	6	0	1	0	0	logfile
✘	7VUY	32131	2025-02-13	2021-11-04	2.84	3.26	—	3.2	0.010	1.12	0.0	0.07	13.83	0.01	1.806	6.64	0.42	4.5	95.5	0.0	-1.74	0.62	0.81	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8708	1112	6	0	1	0	0	logfile
✘	7SP1	25364	2025-02-11	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	11.67	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4343	540	17	20	0	0	0	logfile
✘	7SoA	25264	2025-02-11	2021-10-29	3.1	3.33	3.14	3.3	0.011	1.27	0.0	0.08	10.15	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3850	477	5	0	6	0	0	logfile
✘	7SL9	25195	2025-02-11	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4712	619	3	0	1	0	0	logfile
✘	7SCJ	25036	2025-02-14	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	14.79	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✘	7PRo	13609	2025-02-13	2021-09-22	3.0	3.28	3.20	3.2	0.012	1.09	0.0	0.06	13.80	0.01	2.192	7.00	0.00	4.8	95.2	0.0	-1.65	0.61	0.84	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9032	1160	2	0	0	0	0	logfile
✘	7V6Z	31754	2025-02-12	2021-08-20	3.64	3.89	—	3.9	0.012	1.67	6.0	0.11	14.34	0.01	2.282	9.81	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7082	1008	3	0	6	0	0	logfile
✘	7PiJ	13438	2025-02-12	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	7PHP	13424	2025-02-13	2021-08-18	3.47	3.48	—	3.6	0.017	0.90	0.0	0.05	14.25	0.01	2.182	6.60	0.11	7.0	93.0	0.0	-1.50	0.72	0.83	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1134	8	0	0	21	0	logfile
✘	7FJQ	31627	2025-02-12	2021-08-04	3.6	3.86	—	3.8	0.019	2.03	44.0	0.17	13.67	0.01	1.980	10.56	6.77	10.2	88.1	1.7	-3.67	0.64	0.75	1.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7086	973	2	0	1	0	0	logfile
✘	7Fii	31598	2025-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	7P9V	13267	2025-02-12	2021-07-28	3.4	3.60	3.36	3.5	0.005	0.82	0.0	0.05	15.25	0.01	2.104	15.53	0.00	11.5	88.5	0.0	-2.67	0.62	0.78	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7286	919	6	0	8	0	0	logfile
✘	7RL4	24514	2025-02-11	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4620	680	20	0	0	0	0	logfile
✘	7oZV	13138	2025-02-13	2021-06-28	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8409	991	6	22	2	0	0	logfile

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