Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8oDV	16819	2025-05-11	2023-03-09	4.7	4.86	4.38	4.7	0.007	1.15	0.0	0.05	14.06	0.01	2.192	25.76	0.00	4.6	95.4	0.0	-4.04	0.71	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8233	1022	5	0	1	0	0	logfile
✘	8GFV	29985	2025-05-10	2023-03-08	3.1	3.40	3.19	3.4	0.004	0.58	0.0	0.04	14.48	0.00	2.278	2.46	0.00	1.7	98.3	0.0	1.20	0.67	0.89	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6702	892	8	0	2	3	0	logfile
✘	8GFX	29987	2025-05-10	2023-03-08	3.0	3.31	3.10	3.3	0.004	0.53	0.0	0.04	13.47	0.00	2.248	3.22	0.00	2.2	97.8	0.0	0.67	0.64	0.88	4.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6725	896	6	0	2	1	0	logfile
✘	8GGQ	40017	2025-05-09	2023-03-08	3.4	3.52	3.30	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2130	281	2	0	1	0	0	logfile
✘	8GDA	29944	2025-05-14	2023-03-03	3.3	2.59	3.23	3.3	0.007	0.69	0.0	0.05	13.62	0.00	2.207	5.13	0.41	4.0	96.0	0.0	-0.62	0.78	0.78	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7650	1036	6	0	1	0	0	logfile
✘	8iKG	35511	2025-05-11	2023-02-28	3.4	3.67	3.40	3.7	0.005	0.71	1.0	0.04	13.86	0.00	2.225	11.28	0.34	4.7	95.3	0.0	-0.19	0.63	0.76	1.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8456	1098	6	0	1	0	0	logfile
✘	8GAo	29902	2025-05-23	2023-02-23	4.1	2.86	—	3.7	0.003	0.59	0.0	0.04	12.63	0.00	1.924	12.62	3.47	5.5	94.5	0.0	0.19	0.79	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23987	2931	16	23	12	0	0	logfile
✘	8GA8	29892	2025-05-21	2023-02-22	3.5	3.70	3.50	3.7	0.003	0.54	0.0	0.04	17.43	0.00	2.028	11.33	0.33	2.6	97.4	0.0	0.98	0.70	0.69	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22011	2675	12	0	2	0	0	logfile
✘	8G9X	29881	2025-05-18	2023-02-22	4.46	7.28	4.58	4.4	0.008	1.38	2.0	0.07	19.10	0.01	2.188	9.75	0.00	9.0	90.9	0.2	-4.84	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17036	1983	53	0	111	0	0	logfile
✘	8G9Y	29882	2025-05-18	2023-02-22	4.28	5.75	4.38	4.3	0.008	1.40	4.0	0.07	19.16	0.01	2.193	9.13	0.00	9.6	90.3	0.1	-4.83	0.87	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17135	1983	53	0	120	0	0	logfile
✘	8CL4	16712	2025-05-19	2023-02-16	3.14	3.69	3.43	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13335	1725	15	0	0	0	0	logfile
✘	8iEJ	35383	2025-05-16	2023-02-15	3.12	3.65	3.13	3.1	0.010	0.66	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14086	1030	15	294	4	0	0	logfile
✘	8iD9	35360	2025-05-11	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7996	1095	6	0	1	0	0	logfile
✘	8G4o	29728	2025-05-18	2023-02-10	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17353	2094	20	0	39	0	0	logfile
✘	8G3H	29699	2025-05-10	2023-02-07	3.6	3.80	3.21	3.7	0.017	2.32	9.0	0.26	17.25	0.02	2.228	13.55	4.37	8.7	91.3	0.0	-4.03	0.59	0.52	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6541	841	2	0	2	0	0	logfile
✘	8CHB	16659	2025-05-12	2023-02-07	3.14	3.61	3.17	3.5	0.012	1.75	2.0	0.09	15.26	0.01	2.512	3.80	1.64	3.6	96.4	0.0	-1.52	0.72	0.77	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8916	1158	2	0	0	0	0	logfile
✘	8i9E	35268	2025-05-10	2023-02-06	3.2	3.50	3.01	3.5	0.008	0.80	0.0	0.05	16.27	0.00	2.266	4.96	4.76	9.7	90.3	0.0	-3.37	0.59	0.83	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6421	764	9	0	13	0	0	logfile
✘	8i9F	35269	2025-05-10	2023-02-06	2.9	3.26	2.70	3.2	0.004	0.64	0.0	0.05	16.78	0.00	2.204	4.56	5.51	4.8	95.1	0.1	-2.86	0.73	0.87	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6415	764	9	0	13	0	0	logfile
✘	8i92	35255	2025-05-22	2023-02-06	3.2	3.51	3.08	3.4	0.013	0.95	0.0	0.06	16.45	0.01	1.843	9.78	5.36	7.9	91.9	0.2	-3.72	0.71	0.75	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22344	2710	24	0	40	0	0	logfile
✘	8CE7	16600	2025-05-13	2023-02-01	2.7	2.34	2.47	2.7	0.010	1.43	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile

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