Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8iB2	35329	2024-10-13	2023-02-09	3.8	3.87	3.55	3.8	0.003	0.69	0.0	0.05	13.90	0.01	2.232	3.61	0.00	2.2	97.8	0.0	-0.01	0.59	0.86	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15229	1931	11	0	5	0	0	logfile
✘	8G3Q	29708	2024-10-14	2023-02-08	2.3	3.07	2.34	2.8	0.014	1.71	3.0	0.09	18.86	0.01	2.222	0.91	0.21	3.2	96.4	0.4	-0.93	0.86	0.94	6.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18618	2266	38	0	96	0	0	logfile
✘	8G3Z	29711	2024-10-15	2023-02-08	2.3	3.09	2.40	2.9	0.013	1.66	4.0	0.09	14.36	0.01	2.386	0.97	2.16	4.7	95.1	0.2	-2.34	0.86	0.92	4.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19485	2512	16	0	13	0	0	logfile
✘	8G15	29662	2024-10-11	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10056	1336	4	0	0	0	0	logfile
✘	8CE7	16600	2024-10-11	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8G0D	29654	2024-10-15	2023-01-31	2.9	3.84	3.02	2.9	0.006	0.65	0.0	0.21	9.52	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19874	4860	30	0	16	0	0	logfile
✘	8FZ6	29604	2024-10-10	2023-01-27	2.54	2.71	2.58	2.7	0.002	0.43	0.0	0.04	15.52	0.00	2.199	5.23	1.26	1.4	98.6	0.0	1.88	0.80	0.90	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49780	6404	30	0	0	0	0	logfile
✘	8FY3	29551	2024-10-11	2023-01-25	2.88	3.13	2.93	3.2	0.003	0.49	0.0	0.04	11.51	0.00	2.186	7.75	2.96	4.1	95.9	0.0	1.07	0.57	0.73	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8948	1123	3	0	0	0	0	logfile
✘	8i4A	35167	2024-10-11	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9763	1218	2	0	1	0	0	logfile
✘	8i42	35162	2024-10-13	2023-01-18	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14060	1560	10	0	40	0	0	logfile
✘	8BQV	16188	2024-10-10	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8BQW	16189	2024-10-14	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8FSB	29418	2024-10-14	2023-01-09	2.75	3.19	2.70	3.0	0.004	0.71	0.0	0.05	14.09	0.00	2.031	4.07	0.00	5.3	94.7	0.0	-0.81	0.81	0.82	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16640	1975	10	0	20	0	0	logfile
✘	8HYA	35085	2024-10-13	2023-01-06	3.4	3.97	3.56	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14586	1856	4	0	6	0	0	logfile
✘	8HXA	35074	2024-10-13	2023-01-04	3.04	3.23	3.02	3.2	0.005	1.06	0.0	0.06	15.67	0.01	2.023	5.42	0.18	5.1	94.6	0.3	-0.78	0.68	0.80	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14790	1842	12	0	0	0	0	logfile
✘	8HUD	35035	2024-10-11	2022-12-23	3.43	3.64	3.43	3.6	0.005	0.84	0.0	0.06	20.89	0.00	2.284	10.27	0.56	9.8	90.2	0.0	-1.38	0.71	0.70	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8670	767	4	108	0	0	0	logfile
✘	8HTT	35017	2024-10-09	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile
✘	8C21	16387	2024-10-12	2022-12-21	3.6	4.19	3.27	3.8	0.003	0.58	0.0	0.04	14.61	0.00	2.223	10.61	0.07	5.2	94.4	0.4	0.00	0.65	0.67	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11954	1441	6	0	2	0	0	logfile
✘	8HRC	34967	2024-10-15	2022-12-15	2.58	2.69	2.60	2.6	0.002	0.48	0.0	0.04	13.75	0.00	2.237	8.80	0.01	1.9	98.1	0.0	1.74	0.79	0.84	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74964	9312	12	0	0	0	0	logfile
✘	8HQZ	34955	2024-10-13	2022-12-14	3.8	4.30	3.84	4.1	0.010	0.85	0.0	0.05	12.88	0.02	1.714	3.60	0.08	3.7	96.3	0.0	-1.21	0.84	0.82	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66381	8490	39	0	0	0	0	logfile

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