Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8SX9	40828	2024-11-19	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✘	8P3X	17398	2024-11-18	2023-05-18	3.36	3.85	3.33	3.6	0.013	1.66	2.0	0.11	14.28	0.01	2.232	7.73	1.68	4.4	95.4	0.2	-1.65	0.62	0.66	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17035	2293	8	0	0	0	0	logfile
✘	8P30	17381	2024-11-20	2023-05-16	3.29	3.73	3.33	3.6	0.004	0.59	0.0	0.04	14.22	0.01	2.027	6.21	0.23	2.7	97.3	0.0	1.31	0.70	0.81	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21074	2644	14	0	36	0	0	logfile
✘	8JF1	36206	2024-11-18	2023-05-16	2.85	2.80	2.83	3.0	0.015	1.88	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile
✘	8P28	17359	2024-11-20	2023-05-15	2.77	2.35	2.80	2.1	0.005	0.64	0.0	0.05	13.73	0.00	1.795	6.79	2.15	10.0	89.8	0.2	-1.36	0.78	0.77	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21141	2584	8	0	16	0	0	logfile
✘	8oZE	17306	2024-11-17	2023-05-09	2.91	3.20	3.05	3.2	0.003	0.55	0.0	0.04	17.98	0.00	2.128	9.17	0.00	6.7	93.0	0.3	-0.72	0.72	0.77	2.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13434	1448	8	74	0	0	0	logfile
✘	8SS3	40742	2024-11-20	2023-05-08	3.21	3.40	3.30	3.4	0.047	1.90	0.0	0.69	28.24	0.01	2.123	11.20	0.52	7.6	91.7	0.7	-6.01	0.62	0.80	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19887	2280	12	0	65	0	0	logfile
✘	8J9V	36116	2024-11-17	2023-05-05	2.71	3.58	2.71	3.1	0.003	0.59	0.0	0.04	15.16	0.00	2.053	8.83	0.00	4.1	95.9	0.0	0.57	0.90	0.87	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13918	1556	10	60	4	0	0	logfile
✘	8SQA	40700	2024-11-16	2023-05-04	4.2	4.55	4.26	4.3	0.007	0.81	0.0	0.05	14.35	0.00	2.058	26.55	0.39	18.8	81.2	0.1	-5.75	0.78	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12156	1563	6	0	0	0	0	logfile
✘	8J89	36064	2024-11-17	2023-05-01	2.31	3.12	2.39	2.9	0.003	0.46	0.0	0.04	10.98	0.00	2.215	5.85	0.15	3.6	96.4	0.0	0.51	0.82	0.89	4.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12222	1502	2	0	0	0	0	logfile
✘	8oWN	17240	2024-11-19	2023-04-28	3.26	3.05	3.28	3.2	0.005	0.59	0.0	0.04	14.02	0.00	2.309	6.64	0.00	3.4	96.6	0.0	0.78	0.75	0.87	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18804	2460	12	0	6	0	0	logfile
✘	8So3	40646	2024-11-18	2023-04-28	3.61	3.84	3.58	3.8	0.005	0.85	1.0	0.05	13.96	0.01	1.803	10.38	0.68	6.5	93.4	0.2	-1.49	0.73	0.72	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16718	1205	8	0	4	0	7947	logfile
✘	8SNY	40642	2024-11-17	2023-04-28	3.41	3.37	3.52	3.4	0.004	0.62	1.0	0.04	15.35	0.00	1.932	13.38	0.33	3.5	96.5	0.0	0.92	0.71	0.81	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13744	1680	6	8	0	0	0	logfile
✘	8J7o	36044	2024-11-20	2023-04-27	3.83	5.01	3.89	3.6	0.012	1.60	0.0	0.09	12.72	0.01	2.226	5.17	2.65	1.6	98.3	0.1	-0.24	0.78	0.52	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21168	2748	8	0	4	0	0	logfile
✘	8SNL	40628	2024-11-15	2023-04-27	2.78	3.35	2.84	3.3	0.004	0.73	0.0	0.05	13.03	0.01	2.183	10.77	0.00	5.7	94.3	0.0	-0.70	0.61	0.78	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9098	1147	3	0	2	0	0	logfile
✘	8SMP	40598	2024-11-14	2023-04-26	3.4	3.42	3.22	3.4	0.002	0.53	0.0	0.04	16.40	0.00	2.186	6.37	0.30	4.1	95.7	0.1	1.14	0.61	0.79	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	0.92	—	—	—	2.38	6097	757	5	1	1	0	0	logfile
✘	8SMX	40605	2024-11-19	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13998	1000	13	294	2	0	0	logfile
✘	8J6i	36005	2024-11-15	2023-04-26	2.92	2.81	2.83	3.0	0.006	0.63	0.0	0.04	16.60	0.01	2.167	8.17	0.00	3.7	96.2	0.1	1.37	0.53	0.71	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8801	1131	6	0	1	0	0	logfile
✘	8SN1	40609	2024-11-19	2023-04-26	3.3	3.44	3.29	3.4	0.003	0.52	0.0	0.03	26.48	0.00	1.329	5.23	0.12	2.0	98.0	0.0	1.60	0.71	0.84	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13998	1000	13	294	2	0	0	logfile
✘	8oTQ	17182	2024-11-18	2023-04-21	3.22	3.95	3.36	3.7	0.006	0.90	0.0	0.05	19.19	0.00	2.157	15.02	2.99	5.8	94.1	0.1	1.04	0.68	0.83	1.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16716	2102	4	0	4	0	0	logfile

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