Table showing results for December 2020

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A94	11684	2020-12-08	2020-09-01	3.9	4.30	4.00	4.0	0.007	0.86	3.0	0.05	13.52	0.01	2.085	3.38	0.87	6.8	93.2	0.0	-1.82	0.89	0.84	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30463	3825	8	0	24	0	0	logfile
✘	7A96	11686	2020-12-08	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.88	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29811	3783	4	0	0	0	0	logfile
✘	7A6B	11669	2020-12-07	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.33	0.01	1.893	4.57	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41494	4152	72	0	32	3854	0	logfile
✘	6ZVH	11456	2020-12-07	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	15.50	0.01	1.992	4.93	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.83	—	—	—	3.20	79014	5074	43	1815	33	0	0	logfile
✘	6ZVi	11457	2020-12-07	2020-07-24	3.0	3.20	3.11	3.0	0.007	0.97	0.0	0.05	17.67	0.01	1.914	5.92	0.02	5.2	94.6	0.2	-2.84	0.55	0.84	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80088	4918	40	1946	2	0	0	logfile
✘	6ZTL	11419	2020-12-15	2020-07-20	3.5	3.59	3.62	3.5	0.013	1.01	0.0	0.05	16.35	0.02	0.185	14.00	8.89	7.5	92.2	0.3	-3.13	0.82	0.84	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	173036	8895	76	4799	444	0	28	logfile
✘	7JG7	22313	2020-12-07	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19316	4818	20	0	11	0	0	logfile
✘	6ZQM	11368	2020-12-07	2020-07-10	3.29	3.42	—	3.3	0.009	0.83	0.0	0.12	15.35	0.00	1.787	11.92	0.00	8.2	91.8	0.0	-1.09	0.73	0.82	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80462	5155	42	0	16	17	40460	logfile
✘	6ZQN	11369	2020-12-07	2020-07-10	4.0	3.59	—	3.5	0.008	0.83	0.0	0.12	14.88	0.00	1.537	13.03	0.02	8.6	91.3	0.0	-1.45	0.69	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80631	5165	42	0	16	17	40551	logfile
✘	7CFN	30345	2020-12-06	2020-06-27	3.0	3.32	—	3.3	0.007	1.01	0.0	0.06	10.51	0.01	1.225	7.53	0.12	2.6	97.4	0.0	-2.77	0.62	0.79	4.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8112	1031	5	0	4	1	0	logfile
✘	7CFM	30344	2020-12-06	2020-06-27	3.0	3.21	—	3.2	0.006	0.95	0.0	0.06	10.86	0.01	1.218	8.25	0.24	3.0	97.0	0.0	-2.23	0.61	0.78	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8081	1027	5	0	4	1	0	logfile
✘	6ZFo	11184	2020-12-07	2020-06-17	4.4	4.43	—	4.4	0.003	0.57	0.0	0.04	10.40	0.00	2.157	3.47	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18988	1252	8	0	2	0	9310	logfile
✘	6Z3R	11063	2020-12-08	2020-05-21	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35481	2509	6	0	131	0	16494	logfile
✘	6Z2J	11041	2020-12-07	2020-05-16	4.0	4.25	3.91	4.2	0.005	0.81	0.0	0.06	15.15	0.00	1.425	3.18	0.39	7.9	92.1	0.0	-3.35	0.69	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18876	1185	8	0	8	0	9273	logfile
✘	6Z2K	11042	2020-12-08	2020-05-16	4.5	4.70	4.41	4.5	0.006	0.98	0.0	0.08	14.93	0.01	1.425	5.18	0.15	9.0	90.8	0.2	-3.76	0.80	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37843	2379	19	0	16	0	18577	logfile
✘	6WXU	21963	2020-12-07	2020-05-12	2.7	3.26	—	3.2	0.010	0.78	0.0	0.05	12.47	0.01	1.179	3.95	1.85	4.8	95.2	0.0	-3.08	0.74	0.85	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18156	2214	10	0	40	0	0	logfile
✘	6Z16	11027	2020-12-08	2020-05-12	2.98	2.98	—	3.1	0.009	1.27	0.0	0.06	13.19	0.01	2.238	3.49	0.10	4.5	95.5	0.0	-2.64	0.73	0.83	3.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30250	3744	24	0	30	0	0	logfile
✘	6WXV	21964	2020-12-06	2020-05-12	3.3	3.75	—	3.7	0.007	0.88	2.0	0.05	13.16	0.01	1.217	9.50	0.47	5.5	94.4	0.2	-4.42	0.71	0.77	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10605	1319	5	0	15	0	0	logfile
✘	6YXR	10995	2020-12-09	2020-05-03	3.4	3.53	3.43	3.5	0.019	2.28	2.0	0.13	20.87	0.02	1.197	26.90	0.44	4.1	95.7	0.3	-3.53	0.67	0.76	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31910	2783	20	0	194	0	0	logfile
✘	6WRU	21888	2020-12-07	2020-04-30	3.1	3.22	3.11	3.2	0.008	1.07	8.0	0.06	17.90	0.01	2.010	11.68	1.39	8.1	91.9	0.0	-3.77	0.78	0.85	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81693	2832	29	2777	1	0	0	logfile

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