Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9L1S	62753	2025-01-14	2024-12-15	3.0	3.20	3.20	3.2	0.003	0.66	0.0	0.04	14.05	0.01	1.945	9.32	0.24	6.6	93.4	0.0	-2.12	0.71	0.75	2.11	3.2	0.005	0.77	0.0	0.05	16.76	0.01	2.421	10.26	2.82	8.1	91.9	0.0	-1.41	0.61	0.73	0.79	2.33	7584	989	3	0	0	0	0	logfile
✔	9EKF	48120	2025-01-21	2024-12-02	2.68	2.85	2.70	2.9	0.005	0.87	0.0	0.06	16.75	0.01	0.836	4.34	2.15	4.2	95.8	0.0	-1.19	0.46	0.67	4.39	2.8	0.003	0.63	0.0	0.05	16.88	0.00	2.507	4.87	2.74	3.6	96.4	0.0	-0.41	1.25	0.69	0.89	4.33	17537	2145	15	0	33	0	0	logfile
✔	9EGY	48040	2025-01-21	2024-11-21	2.9	4.25	—	3.1	0.003	0.55	0.0	0.04	14.41	0.00	2.001	4.78	1.01	6.8	93.1	0.1	-1.24	0.77	0.56	1.31	2.3	0.004	0.67	0.0	0.04	17.53	0.00	1.980	8.93	0.85	4.8	95.1	0.0	-0.15	0.85	0.84	0.76	1.15	66649	8389	41	330	10	0	0	logfile
✔	9EH0	48042	2025-01-25	2024-11-21	3.6	4.40	—	3.9	0.004	0.59	0.0	0.04	14.80	0.00	1.904	9.45	0.49	5.5	94.4	0.1	-1.01	0.79	0.66	1.11	3.9	0.004	0.67	0.0	0.04	17.69	0.00	1.934	10.13	2.04	5.0	95.0	0.0	-0.17	1.72	0.82	0.75	1.19	73438	8801	42	384	10	0	0	logfile
✔	9EH1	48043	2025-01-25	2024-11-21	3.1	4.18	—	3.0	0.008	1.07	0.0	0.09	14.62	0.00	1.788	9.47	0.53	5.6	94.4	0.0	-0.90	0.83	0.67	0.72	2.2	0.007	0.86	1.0	0.05	17.84	0.01	1.985	17.58	1.37	7.2	92.8	0.0	-0.90	1.32	0.85	0.75	0.96	72243	8652	42	362	10	0	0	logfile
✔	9EGZ	48041	2025-01-22	2024-11-21	2.9	4.24	—	3.1	0.004	0.66	0.0	0.05	14.20	0.00	1.945	6.42	0.94	6.8	93.1	0.1	-1.37	0.77	0.57	1.37	2.3	0.003	0.65	0.0	0.04	17.18	0.00	2.065	8.78	1.01	4.6	95.3	0.0	-0.28	2.58	0.84	0.76	1.17	68741	8651	43	328	13	0	0	logfile
✔	9EGX	48039	2025-01-20	2024-11-21	2.9	4.30	—	3.1	0.004	0.69	0.0	0.04	15.38	0.01	2.018	8.54	0.50	4.6	95.3	0.1	-1.07	0.77	0.57	1.20	2.3	0.007	0.80	0.0	0.05	17.53	0.01	1.851	13.86	1.01	6.2	93.8	0.0	-0.64	0.68	0.84	0.76	1.33	65003	8183	39	328	10	0	0	logfile
✔	9EF0	40857	2025-01-14	2024-11-19	3.33	3.49	3.34	3.5	0.002	0.54	0.0	0.04	16.80	0.00	2.198	10.63	0.96	3.6	96.4	0.0	-0.60	0.70	0.79	1.99	3.5	0.003	0.60	0.0	0.04	17.57	0.00	2.498	10.94	3.06	3.8	96.2	0.0	-0.37	0.82	0.69	0.79	2.06	4993	613	2	0	2	0	0	logfile
✔	9ECo	47923	2025-01-13	2024-11-14	2.83	3.57	3.02	3.2	0.005	1.42	0.0	0.04	14.32	0.00	1.871	5.38	1.55	3.0	96.9	0.1	2.04	0.81	0.81	2.60	3.3	0.006	1.03	0.0	0.04	15.35	0.00	0.710	3.94	1.63	5.0	94.9	0.1	1.60	0.90	0.82	0.83	2.31	46691	2954	15	13	15	0	23184	logfile
✔	9HBB	52014	2025-01-14	2024-11-06	3.0	3.19	2.93	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.56	0.0	0.05	15.54	0.00	2.476	1.41	2.27	3.4	96.6	0.0	-1.67	1.40	0.44	0.85	5.16	7074	456	6	0	0	0	3606	logfile
✔	9E8L	47724	2025-01-23	2024-11-05	3.59	4.31	3.93	3.9	0.012	1.92	76.0	0.11	15.80	0.02	0.641	8.75	4.80	8.2	89.7	2.1	-2.62	0.75	0.65	0.59	3.9	0.004	0.87	0.0	0.05	17.27	0.00	1.923	16.17	2.82	6.3	93.4	0.3	-0.07	1.87	0.82	0.81	0.63	70392	8925	35	0	23	0	0	logfile
✔	9E8K	47723	2025-01-19	2024-11-05	4.08	4.57	5.08	4.1	0.013	1.97	64.0	0.11	16.42	0.02	0.845	7.46	5.57	9.5	88.0	2.5	-3.31	0.72	0.62	—	4.1	0.004	0.83	0.0	0.05	14.70	0.01	1.832	17.88	0.00	7.7	91.9	0.4	-1.03	2.29	0.78	0.76	—	62343	7893	34	0	16	0	0	logfile
✔	9E8H	47720	2025-01-23	2024-11-05	2.9	3.56	3.09	3.4	0.003	0.56	0.0	0.04	18.20	0.00	1.884	11.58	2.45	2.5	97.5	0.0	0.72	0.78	0.84	2.29	3.4	0.003	0.67	0.0	0.04	18.35	0.00	1.932	10.07	2.26	2.6	97.4	0.0	1.36	3.24	0.72	0.83	1.94	71304	8986	34	0	13	0	0	logfile
✔	9E8N	47725	2025-01-23	2024-11-05	3.62	4.00	4.16	3.9	0.016	1.96	103.0	0.11	16.00	0.02	1.070	14.04	5.56	8.4	89.0	2.7	-1.92	0.66	0.67	0.98	3.9	0.005	0.90	0.0	0.05	17.78	0.01	1.835	18.14	4.54	6.8	92.8	0.4	-0.61	0.97	0.69	0.76	0.77	70912	8983	36	0	19	0	0	logfile
✔	9E8J	47722	2025-01-23	2024-11-05	3.47	4.11	3.81	3.9	0.005	0.78	3.0	0.04	18.21	0.02	1.241	69.76	5.60	8.8	90.7	0.5	-1.75	0.77	0.76	1.08	3.8	0.003	0.81	0.0	0.04	17.90	0.00	1.956	15.87	3.18	5.8	94.0	0.1	-0.06	3.48	0.79	0.83	0.80	70858	8967	36	0	22	0	0	logfile
✔	9E8i	47721	2025-01-23	2024-11-05	2.87	3.52	3.07	3.3	0.003	0.58	0.0	0.04	18.22	0.00	1.930	11.89	2.36	2.5	97.5	0.0	0.41	0.78	0.85	2.74	3.4	0.003	0.71	0.0	0.04	18.37	0.00	1.959	10.41	2.93	2.7	97.2	0.0	1.23	2.22	0.74	0.85	2.18	71304	8986	34	0	13	0	0	logfile
✔	9H76	51912	2025-01-13	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.004	0.64	0.0	0.04	16.39	0.00	2.479	6.26	2.05	2.2	97.8	0.0	2.15	0.63	0.64	0.87	3.18	4157	547	3	0	0	0	0	logfile
✔	9H5G	51884	2025-01-13	2024-10-22	2.48	2.59	2.48	2.6	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.005	0.91	0.0	0.05	16.89	0.00	2.599	2.68	4.23	6.4	93.6	0.0	-2.79	0.65	0.45	0.89	4.11	3300	432	6	0	0	0	0	logfile
✔	9H5J	51886	2025-01-13	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.004	0.78	0.0	0.05	17.38	0.01	2.595	4.02	2.91	5.5	94.5	0.0	-3.05	0.83	0.45	0.91	5.20	3300	432	6	0	0	0	0	logfile
✔	9K1D	61972	2025-01-14	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.003	0.66	0.0	0.04	16.75	0.00	2.420	7.36	4.23	3.1	96.9	0.0	0.65	0.42	0.71	0.85	1.47	6892	858	5	0	6	0	0	logfile

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