Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CBU	42499	2025-01-18	2024-06-20	2.2	2.61	2.34	2.6	0.014	1.85	0.0	0.09	23.00	0.05	1.831	0.24	0.00	0.0	0.0	0.0	—	0.58	0.72	—	2.6	0.005	0.65	0.0	0.04	24.05	0.01	1.764	5.62	0.00	0.0	0.0	0.0	—	1.25	0.65	0.80	—	12600	0	2	387	22	134	4161	logfile
✔	9CBX	42499	2025-01-18	2024-06-20	2.2	2.61	2.34	2.6	0.014	1.85	0.0	0.09	23.00	0.05	1.797	0.24	0.00	0.0	0.0	0.0	—	0.58	0.71	—	2.6	0.006	0.67	0.0	0.04	23.93	0.01	1.754	4.88	0.00	0.0	0.0	0.0	—	1.24	0.62	0.77	—	12778	0	2	387	54	280	4161	logfile
✔	9FS5	50723	2025-01-21	2024-06-20	2.66	3.55	2.70	3.5	0.004	0.50	0.0	0.04	15.59	0.00	2.222	6.29	3.60	4.5	95.5	0.0	0.97	0.61	0.63	0.52	3.3	0.004	0.58	0.0	0.04	16.71	0.00	2.477	7.38	3.49	3.0	97.0	0.0	1.06	1.08	0.70	0.87	3.49	16770	2250	10	0	0	0	0	logfile
✔	8ZYN	60573	2025-01-14	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.56	0.00	2.623	5.34	2.88	2.5	97.5	0.0	1.33	0.34	0.59	0.84	1.37	6640	840	4	0	0	0	0	logfile
✔	8ZYo	60574	2025-01-14	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.003	0.55	0.0	0.04	16.53	0.00	2.540	6.58	4.49	2.3	97.7	0.0	2.07	0.30	0.58	0.85	1.84	6238	785	5	0	1	0	0	logfile
✔	8ZYZ	60584	2025-01-15	2024-06-18	3.16	2.82	3.05	3.1	0.004	0.53	0.0	0.04	18.05	0.00	2.087	8.66	0.11	2.1	97.9	0.0	3.30	0.60	0.80	1.20	3.1	0.003	0.50	0.0	0.04	18.11	0.00	2.487	8.16	1.70	1.9	98.1	0.0	3.98	1.38	0.56	0.78	1.51	8918	1174	12	0	2	5	0	logfile
✔	8ZYV	60580	2025-01-15	2024-06-18	3.12	2.96	3.00	3.2	0.003	0.49	0.0	0.03	17.75	0.00	2.173	7.29	0.43	1.6	98.4	0.0	3.33	0.60	0.82	1.10	3.2	0.004	0.53	0.0	0.04	17.94	0.00	2.389	7.73	2.13	2.1	97.9	0.0	3.60	0.25	0.58	0.82	1.07	8913	1174	10	0	2	5	0	logfile
✔	8ZYW	60581	2025-01-15	2024-06-18	3.43	3.41	3.36	3.6	0.003	0.55	0.0	0.04	17.93	0.00	2.109	8.67	0.32	1.7	98.3	0.0	3.05	0.60	0.78	0.40	3.6	0.003	0.48	0.0	0.04	18.39	0.00	2.493	6.24	3.09	1.7	98.3	0.0	3.86	0.27	0.55	0.78	0.36	8910	1174	10	0	0	4	0	logfile
✔	8ZYQ	60576	2025-01-14	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.56	0.0	0.04	16.17	0.00	2.533	5.61	2.88	2.4	97.6	0.0	1.76	0.36	0.56	0.84	2.56	6329	796	5	0	1	0	0	logfile
✔	8ZZ0	60585	2025-01-15	2024-06-18	3.43	3.30	3.36	3.5	0.003	0.58	0.0	0.04	17.58	0.01	2.123	9.76	0.00	1.9	98.1	0.0	2.96	0.67	0.80	0.46	3.5	0.003	0.56	0.0	0.04	17.80	0.00	2.521	7.78	1.91	1.8	98.2	0.0	3.63	1.39	0.67	0.82	0.53	8914	1174	10	0	0	3	0	logfile
✔	9CA0	45378	2025-01-14	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.42	0.00	2.535	5.87	2.85	4.0	96.0	0.0	-0.51	0.35	0.79	0.81	1.55	6265	773	5	10	1	0	0	logfile
✔	9CA1	45379	2025-01-14	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.56	0.00	2.102	5.55	3.45	4.0	96.0	0.0	0.28	0.31	0.78	0.82	1.66	6265	773	5	10	2	0	0	logfile
✔	9C9Y	45376	2025-01-14	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	2.3	0.003	0.60	0.0	0.04	18.31	0.00	2.126	4.61	2.40	3.8	96.2	0.0	0.28	0.92	0.78	0.81	1.78	6225	773	4	8	2	0	0	logfile
✔	8ZXP	60548	2025-01-18	2024-06-14	3.09	3.32	3.14	3.5	0.005	0.98	0.0	0.05	16.93	0.01	2.297	4.76	0.41	5.2	94.8	0.0	-1.54	0.59	0.80	2.09	3.5	0.003	0.61	0.0	0.04	16.90	0.00	2.603	8.14	3.69	3.7	96.3	0.0	2.01	0.34	0.59	0.80	1.93	11586	1482	6	0	3	0	0	logfile
✔	8ZXK	60542	2025-01-17	2024-06-14	2.76	2.94	2.77	3.0	0.003	0.54	0.0	0.04	16.40	0.00	2.171	8.86	0.16	4.7	95.3	0.0	2.48	0.72	0.81	2.31	3.0	0.003	0.55	0.0	0.04	16.90	0.00	2.479	8.27	3.58	4.6	95.4	0.0	2.72	0.19	0.62	0.81	2.34	11653	1490	6	0	3	0	0	logfile
✔	8ZXD	60540	2025-01-23	2024-06-14	2.9	3.66	3.09	3.6	0.002	0.41	0.0	0.03	12.72	0.00	2.255	5.31	0.00	2.1	97.9	0.0	2.78	0.54	0.70	1.63	3.6	0.003	0.57	0.0	0.04	15.39	0.00	2.407	5.46	2.47	1.9	98.1	0.0	2.29	1.40	0.55	0.73	1.70	19518	2328	12	0	18	0	0	logfile
✔	8ZX1	60536	2025-01-16	2024-06-13	3.5	2.57	3.56	2.3	0.007	1.12	2.0	0.06	13.96	0.01	1.921	17.54	1.01	3.5	96.5	0.0	-0.25	0.61	0.61	0.90	2.3	0.003	0.72	0.0	0.04	16.78	0.00	2.412	8.37	3.50	3.2	96.8	0.0	0.30	0.70	0.71	0.69	0.71	9846	1240	4	0	0	0	0	logfile
✔	8ZWi	60528	2025-01-13	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.006	0.63	0.0	0.05	15.16	0.00	2.588	5.57	1.55	3.7	96.3	0.0	-2.04	0.90	0.42	0.86	5.73	2526	366	6	0	0	0	0	logfile
✔	8ZWJ	60529	2025-01-13	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.83	0.00	2.573	3.76	3.33	8.7	91.3	0.0	-2.16	1.27	0.42	0.86	4.43	2760	378	8	6	0	0	0	logfile
✔	8ZX6	60539	2025-01-13	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.007	0.78	0.0	0.05	14.16	0.00	2.638	7.22	1.52	11.9	88.1	0.0	-3.55	0.71	0.35	0.84	5.02	3468	456	6	0	0	0	0	logfile

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