Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F43	50182	2025-01-15	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.61	0.0	0.04	15.70	0.00	2.565	7.63	2.88	4.4	95.5	0.1	0.54	0.57	0.66	0.80	1.41	8465	1061	2	0	0	0	0	logfile
✔	8ZBE	39901	2025-01-14	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.004	0.66	0.0	0.04	16.30	0.00	2.491	9.33	6.62	5.9	94.1	0.0	-1.09	0.45	0.61	0.68	1.04	7489	1113	7	0	1	0	0	logfile
✔	8ZBA	39899	2025-01-16	2024-04-26	3.57	3.81	3.60	3.8	0.003	0.59	0.0	0.04	13.82	0.00	2.234	8.37	0.00	10.7	89.3	0.0	-2.46	0.70	0.76	2.09	3.8	0.005	0.71	0.0	0.05	16.50	0.00	2.456	9.40	2.81	12.1	87.8	0.1	-2.60	2.03	0.72	0.79	1.77	9973	1267	4	0	0	0	0	logfile
✔	9F44	50183	2025-01-18	2024-04-26	3.68	4.36	3.71	3.9	0.003	0.51	0.0	0.04	13.42	0.00	2.161	7.02	1.65	2.7	97.3	0.0	2.01	0.90	0.80	0.86	4.0	0.003	0.67	0.0	0.04	14.79	0.00	2.458	10.68	1.41	2.7	97.2	0.1	1.54	0.60	0.90	0.81	1.04	56848	7140	10	0	2	0	0	logfile
✔	9F42	50181	2025-01-15	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.006	0.69	0.0	0.05	15.32	0.01	2.578	11.29	3.74	5.5	94.5	0.0	-0.33	1.42	0.60	0.77	2.51	8465	1061	2	0	0	0	0	logfile
✔	8ZB9	39898	2025-01-14	2024-04-26	3.31	3.44	3.32	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.50	0.00	2.516	6.92	5.16	9.1	90.9	0.0	-2.07	0.43	0.72	0.85	3.07	4904	622	2	0	0	0	0	logfile
✔	9F45	50184	2025-01-18	2024-04-26	3.74	4.61	—	3.8	0.003	0.50	0.0	0.04	11.49	0.00	2.145	8.38	2.01	2.6	97.3	0.1	2.22	0.90	0.81	0.74	3.8	0.003	0.67	0.0	0.04	13.73	0.00	2.309	11.49	1.38	2.9	97.1	0.0	1.67	1.50	0.91	0.83	0.81	56848	7140	10	0	2	0	0	logfile
✔	9F3F	50173	2025-01-14	2024-04-25	2.4	2.90	2.38	2.7	0.008	1.18	1.0	0.07	16.34	0.01	2.180	16.32	2.45	4.3	95.7	0.0	-0.13	0.84	0.84	3.55	2.6	0.003	0.63	0.0	0.04	17.69	0.00	2.541	8.29	3.19	3.3	96.7	0.0	1.48	0.57	0.83	0.86	3.23	7496	939	4	1	0	0	0	logfile
✔	9BiU	44602	2025-01-16	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.003	0.59	0.0	0.04	17.12	0.00	2.239	5.49	1.80	6.6	93.4	0.0	0.80	0.33	0.62	0.84	2.50	9458	595	3	0	1	0	4738	logfile
✔	9BiT	44601	2025-01-16	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.002	0.54	0.0	0.04	18.29	0.00	2.262	4.44	2.20	5.8	94.2	0.0	0.73	0.33	0.63	0.85	2.71	9448	595	3	0	1	0	4734	logfile
✔	9BiS	44600	2025-01-16	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.56	0.0	0.04	18.21	0.00	2.292	5.18	1.80	7.0	93.0	0.0	0.89	0.79	0.61	0.84	3.06	9444	595	3	0	1	0	4734	logfile
✔	8Z9Z	39873	2025-01-18	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.50	0.0	0.04	18.33	0.00	2.443	7.85	3.19	2.4	97.6	0.0	3.28	0.30	0.61	0.79	1.47	12648	1519	8	0	6	0	0	logfile
✔	8Z9Y	39872	2025-01-21	2024-04-23	2.5	2.86	2.66	2.8	0.003	0.65	0.0	0.04	16.90	0.00	2.160	9.43	0.11	6.9	93.0	0.1	0.55	0.62	0.76	2.65	2.8	0.003	0.63	0.0	0.04	17.78	0.01	2.133	7.18	2.41	6.3	93.6	0.1	0.54	0.42	0.66	0.79	2.66	16671	1980	6	0	0	0	0	logfile
✔	9BiB	44586	2025-01-23	2024-04-23	3.81	4.09	3.87	4.0	0.004	0.63	12.0	0.06	7.50	0.00	2.200	3.34	4.65	3.0	96.9	0.1	-2.18	0.64	0.64	1.95	4.0	0.003	0.59	0.0	0.04	11.92	0.00	2.518	4.15	4.93	5.2	94.8	0.1	0.64	0.67	0.69	0.73	2.00	19269	3172	8	0	0	0	0	logfile
✔	9BiH	44590	2025-01-21	2024-04-23	3.24	3.97	3.16	3.5	0.008	0.57	0.0	0.05	12.12	0.00	2.204	4.95	1.63	3.5	96.5	0.0	-0.56	0.77	0.58	0.37	3.5	0.004	0.59	0.0	0.04	14.45	0.00	2.501	7.74	1.19	2.8	97.2	0.0	-0.02	2.12	0.91	0.88	2.77	17576	2084	8	55	0	0	0	logfile
✔	9BiM	44593	2025-01-13	2024-04-23	3.67	3.99	3.69	4.0	0.004	0.75	0.0	0.04	13.02	0.01	2.259	4.86	0.00	2.9	97.1	0.0	0.00	0.55	0.80	1.98	4.0	0.003	0.58	0.0	0.04	13.70	0.00	2.635	6.23	1.45	2.7	97.3	0.0	1.78	0.33	0.60	0.82	1.38	3992	516	2	0	1	0	0	logfile
✔	9BiA	44585	2025-01-17	2024-04-23	3.0	3.28	3.03	3.3	0.003	0.60	0.0	0.04	13.72	0.00	2.333	1.44	0.00	1.8	98.2	0.0	0.99	0.44	0.77	3.80	3.3	0.003	0.50	0.0	0.04	15.97	0.00	2.412	4.03	1.08	0.9	98.9	0.2	3.44	0.66	0.51	0.82	2.92	10430	672	6	0	0	0	5263	logfile
✔	9Bi9	44577	2025-01-14	2024-04-23	2.61	3.67	2.64	3.4	0.003	0.53	0.0	0.04	12.52	0.00	2.243	5.09	0.00	4.4	95.6	0.0	0.82	0.72	0.75	3.46	3.4	0.004	0.62	0.0	0.04	14.90	0.01	2.378	5.10	0.96	4.0	96.0	0.0	0.53	2.17	0.75	0.79	2.50	7578	497	2	0	1	0	3712	logfile
✔	8Z9A	39858	2025-01-18	2024-04-23	3.0	3.24	3.08	3.3	0.005	0.84	0.0	0.04	16.75	0.01	2.163	6.19	1.56	2.3	97.7	0.0	2.18	0.58	0.81	1.75	3.3	0.004	0.53	0.0	0.04	16.81	0.00	2.586	5.43	2.62	2.3	97.7	0.0	3.14	1.11	0.54	0.79	1.85	13021	1557	8	0	8	0	0	logfile
✔	8Z9E	39861	2025-01-23	2024-04-23	3.13	3.34	3.22	3.3	0.006	1.06	1.0	0.06	18.26	0.01	2.136	7.61	0.69	4.3	95.3	0.4	-2.57	0.70	0.80	2.47	3.4	0.003	0.59	0.0	0.04	18.56	0.00	2.045	8.79	2.43	2.7	97.2	0.0	0.16	1.07	0.71	0.82	2.68	20770	2484	20	73	7	0	0	logfile

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