Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iVK	60929	2025-01-14	2024-07-23	2.74	3.03	2.77	3.0	0.006	0.86	0.0	0.06	14.94	0.00	2.231	9.92	0.69	2.0	98.0	0.0	1.92	0.59	0.74	2.64	3.0	0.003	0.56	0.0	0.04	17.05	0.00	2.524	5.64	1.61	1.8	98.2	0.0	2.81	1.25	0.61	0.79	2.48	4077	507	4	0	1	0	0	logfile
✔	9iVG	60927	2025-01-16	2024-07-23	3.0	3.73	3.06	3.5	0.003	0.56	0.0	0.04	18.21	0.00	2.127	7.87	3.98	5.1	94.7	0.2	0.58	0.75	0.87	2.24	3.5	0.004	0.74	0.0	0.04	18.13	0.00	2.436	7.17	3.38	5.5	94.4	0.2	0.74	0.69	0.67	0.80	2.29	9325	1170	6	0	0	0	0	logfile
✔	9G8B	51127	2025-01-21	2024-07-23	3.5	3.76	3.53	3.7	0.018	1.49	0.0	0.08	8.25	0.01	2.028	3.20	0.00	0.3	99.7	0.0	1.59	0.76	0.83	3.48	3.7	0.006	0.96	3.0	0.05	11.95	0.01	2.404	3.04	3.04	3.5	96.5	0.0	0.69	1.21	0.76	0.86	3.87	17346	2415	7	0	0	0	0	logfile
✔	9iUZ	60916	2025-01-15	2024-07-22	3.19	3.81	3.34	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.63	0.0	0.04	18.23	0.00	2.488	6.13	2.77	3.7	96.3	0.0	1.35	0.93	0.76	0.83	1.39	8349	1061	5	0	2	0	0	logfile
✔	9iU1	60886	2025-01-17	2024-07-20	4.3	4.47	4.35	4.4	0.003	0.60	0.0	0.04	17.14	0.00	2.241	9.47	0.00	8.5	91.5	0.0	0.02	0.64	0.68	—	4.4	0.003	0.67	0.0	0.04	14.84	0.00	2.417	9.16	0.00	8.7	91.3	0.0	-0.55	0.69	0.65	0.68	—	6603	790	8	0	14	0	0	logfile
✔	9G6V	51105	2025-01-24	2024-07-19	2.9	3.36	3.12	3.3	0.003	0.44	0.0	0.04	8.59	0.00	2.254	5.44	0.68	4.7	95.3	0.0	-0.91	0.73	0.81	3.64	3.3	0.003	0.55	0.0	0.04	13.76	0.00	2.299	6.29	2.38	5.2	94.8	0.0	-1.40	0.57	0.67	0.78	3.20	21815	2760	20	0	0	0	0	logfile
✔	9CPo	45805	2025-01-25	2024-07-18	3.5	3.83	3.56	3.9	0.003	0.49	0.0	0.04	15.92	0.00	2.159	4.11	0.00	4.7	95.3	0.0	0.08	0.66	0.77	2.63	3.9	0.002	0.47	0.0	0.04	16.02	0.00	2.396	3.16	1.54	3.5	96.5	0.0	0.36	0.26	0.67	0.78	2.03	24089	1392	7	63	2	0	11624	logfile
✔	9G5K	51088	2025-01-13	2024-07-17	2.87	2.98	2.85	2.9	0.004	0.60	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.67	0.0	0.04	16.37	0.00	2.489	5.71	3.52	2.8	97.2	0.0	2.13	0.91	0.64	0.84	2.71	4040	507	3	0	1	0	0	logfile
✔	9CoP	45788	2025-01-22	2024-07-17	2.7	3.39	—	3.3	0.006	0.94	2.0	0.05	13.67	0.01	2.198	5.73	0.95	4.7	95.3	0.1	-0.45	0.73	0.53	-0.05	3.1	0.004	0.65	0.0	0.04	15.90	0.00	1.921	6.23	1.13	4.1	95.9	0.0	0.43	1.45	0.86	0.83	2.82	69993	5041	16	0	4	0	33498	logfile
✔	9Coo	45787	2025-01-14	2024-07-17	3.73	4.04	3.71	3.9	0.003	0.66	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.004	0.74	0.0	0.04	16.95	0.00	2.236	11.11	6.61	8.2	91.8	0.0	-2.17	2.38	0.79	0.75	0.72	7493	1028	8	0	6	0	0	logfile
✔	9Co9	45774	2025-01-14	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.004	0.78	0.0	0.05	15.55	0.00	2.396	8.91	3.58	5.2	94.5	0.3	-1.37	2.38	0.75	0.83	2.61	5198	661	4	0	0	0	0	logfile
✔	9Co7	45772	2025-01-14	2024-07-16	3.32	4.05	3.32	3.9	0.005	1.07	0.0	0.06	13.46	0.01	2.215	5.41	0.18	8.4	90.9	0.8	-2.76	0.74	0.82	2.87	3.8	0.004	0.87	0.0	0.05	15.35	0.01	2.483	10.62	2.14	8.7	90.9	0.5	-1.84	1.38	0.75	0.84	3.12	5220	666	4	0	0	0	0	logfile
✔	9CoD	45776	2025-01-18	2024-07-16	4.7	4.64	4.82	4.3	0.004	1.08	0.0	0.04	13.74	0.00	2.175	20.80	0.00	24.3	71.8	3.9	-4.85	0.84	0.75	—	4.4	0.003	0.91	0.0	0.05	14.24	0.00	2.529	14.30	0.00	24.2	70.9	4.9	-4.87	1.27	0.84	0.76	—	12405	1575	15	0	0	0	0	logfile
✔	9CNZ	45767	2025-01-19	2024-07-15	3.1	3.13	3.12	3.1	0.004	0.68	0.0	0.05	13.57	0.01	2.259	3.52	0.00	2.2	97.8	0.0	0.43	0.76	0.83	3.46	3.1	0.002	0.55	0.0	0.04	15.40	0.00	2.501	5.70	1.90	2.0	98.0	0.0	1.01	1.26	0.75	0.85	2.79	12854	1638	11	0	6	0	0	logfile
✔	9Co0	45768	2025-01-17	2024-07-15	3.3	3.32	3.26	3.2	0.003	0.69	0.0	0.05	13.26	0.01	2.219	4.93	0.00	2.4	97.6	0.0	0.21	0.74	0.80	3.04	3.2	0.003	0.61	0.0	0.04	15.56	0.00	2.513	7.87	2.19	3.2	96.8	0.0	0.56	1.29	0.75	0.83	2.74	10766	1368	11	0	6	0	0	logfile
✔	9CNW	45764	2025-01-18	2024-07-15	2.6	2.60	2.57	2.5	0.003	0.58	0.0	0.04	12.85	0.00	2.133	1.84	0.00	1.8	98.2	0.0	1.26	0.78	0.84	4.36	2.5	0.004	0.63	0.0	0.05	16.22	0.00	2.514	3.54	1.84	2.2	97.8	0.0	1.28	0.41	0.80	0.88	3.73	11647	1493	5	0	0	0	0	logfile
✔	9CNX	45765	2025-01-21	2024-07-15	3.55	3.57	3.52	3.4	0.003	0.70	0.0	0.05	12.67	0.01	2.310	1.93	0.00	2.3	97.7	0.0	0.18	0.78	0.83	3.10	3.4	0.005	0.64	0.0	0.04	14.68	0.00	2.418	2.94	1.29	3.2	96.8	0.0	0.77	0.39	0.80	0.85	3.16	11582	1481	7	0	3	0	0	logfile
✔	9CMi	45749	2025-01-15	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.003	0.88	0.0	0.04	15.67	0.00	2.303	8.19	2.43	3.5	96.5	0.0	-0.11	0.96	0.76	0.78	2.60	7877	1025	7	0	1	2	0	logfile
✔	9CMP	45752	2025-01-14	2024-07-15	3.3	3.63	3.24	3.4	0.004	0.77	0.0	0.05	14.58	0.00	2.141	1.52	0.46	3.9	96.1	0.0	-1.15	0.73	0.66	2.05	3.4	0.003	0.61	0.0	0.04	16.17	0.00	2.274	7.68	2.52	3.5	96.5	0.0	-0.31	1.57	0.76	0.70	1.75	6211	768	4	43	1	0	0	logfile
✔	9CMH	45748	2025-01-13	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.84	0.0	0.04	15.66	0.00	2.529	22.08	3.84	5.2	94.8	0.0	-0.98	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile

• ← previous
• Page 7 of 550
• next →