Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S82	24889	2025-02-13	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.60	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.004	0.73	0.0	0.04	15.85	0.00	2.515	12.87	1.29	4.0	96.0	0.0	-1.18	1.09	0.78	0.82	1.82	4904	634	4	0	0	0	0	logfile
✔	7VGG	31968	2025-02-11	2021-09-16	3.1	3.32	—	3.3	0.004	0.57	0.0	0.05	13.32	0.00	2.025	6.09	0.00	3.0	97.0	0.0	-0.81	0.76	0.82	3.77	3.3	0.004	0.59	0.0	0.05	15.65	0.00	2.135	7.73	1.92	3.4	96.6	0.0	-0.66	0.92	0.78	0.86	3.09	5274	680	2	0	0	0	0	logfile
✔	7VGF	31967	2025-02-12	2021-09-16	3.3	3.62	—	3.5	0.004	0.70	0.0	0.04	14.50	0.00	2.083	9.67	0.24	3.3	96.7	0.0	2.62	0.63	0.74	1.47	3.5	0.003	0.54	0.0	0.04	15.69	0.00	2.024	5.84	3.70	2.8	97.2	0.0	2.87	0.50	0.70	0.80	1.49	8280	1100	4	0	4	0	0	logfile
✔	7PQ5	13587	2025-02-13	2021-09-16	3.17	3.58	3.09	3.4	0.005	0.85	0.0	0.05	15.55	0.01	2.255	3.50	2.82	4.5	95.3	0.2	-0.13	0.85	0.87	5.15	3.4	0.002	0.62	0.0	0.04	15.87	0.00	2.384	2.78	0.56	4.5	95.5	0.0	0.14	1.10	0.82	0.88	4.45	8512	1047	1	0	0	0	0	logfile
✔	7VFX	31962	2025-02-13	2021-09-14	2.8	2.73	2.85	2.9	0.003	0.65	0.0	0.05	15.03	0.00	2.225	5.38	0.00	3.1	96.9	0.0	0.41	0.70	0.87	3.94	2.9	0.002	0.56	0.0	0.04	15.39	0.00	2.492	4.60	0.82	2.3	97.7	0.0	1.15	1.25	0.71	0.89	3.60	9004	1139	7	0	4	0	0	logfile
✔	7VG3	31964	2025-02-12	2021-09-14	3.73	3.86	—	3.8	0.006	1.15	2.0	0.06	16.12	0.01	1.935	7.51	5.13	10.8	88.7	0.6	-4.51	0.80	0.84	3.10	3.8	0.003	0.71	0.0	0.04	17.40	0.00	2.285	8.16	4.21	9.8	90.2	0.0	-1.59	1.04	0.80	0.85	1.59	8118	860	4	62	3	0	0	logfile
✔	7VG2	31963	2025-02-12	2021-09-14	3.1	2.73	—	3.0	0.016	1.43	1.0	0.09	16.55	0.01	1.822	17.56	1.74	8.0	91.8	0.2	-3.84	0.72	0.79	3.83	3.0	0.003	0.64	0.0	0.04	17.70	0.00	2.209	12.71	4.67	5.9	94.1	0.0	0.14	0.50	0.70	0.79	2.39	8203	845	4	71	3	0	0	logfile
✔	7PPJ	13581	2025-02-11	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.25	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	3.8	0.003	0.68	0.0	0.04	15.64	0.00	2.548	10.31	1.72	4.6	95.4	0.0	-0.13	0.59	0.72	0.78	1.63	5175	643	2	0	1	0	0	logfile
✔	7VFJ	31956	2025-02-13	2021-09-13	3.98	4.28	—	4.1	0.004	0.83	0.0	0.05	13.08	0.01	2.134	13.86	0.00	7.0	92.8	0.3	-0.92	0.66	0.77	1.38	4.1	0.003	0.89	0.0	0.05	16.51	0.00	2.419	13.92	3.82	7.7	92.2	0.1	-0.70	0.63	0.67	0.79	0.93	8780	1130	6	0	0	0	0	logfile
✔	7VFi	31955	2025-02-13	2021-09-13	3.98	5.00	—	4.6	0.008	1.01	0.0	0.05	15.62	0.01	2.216	10.24	0.21	6.6	93.4	0.0	-2.75	0.71	0.85	0.84	4.6	0.003	0.73	0.0	0.04	16.36	0.00	2.480	10.35	2.96	3.7	96.3	0.0	0.67	1.29	0.70	0.84	0.71	8903	1149	5	0	3	0	0	logfile
✔	7VFP	31957	2025-02-13	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.04	0.00	2.002	13.94	0.00	5.5	94.4	0.1	0.34	0.56	0.64	0.77	—	8857	1130	8	0	3	2	0	logfile
✔	7S5T	24839	2025-02-14	2021-09-12	3.1	3.47	—	3.4	0.005	0.68	0.0	0.05	15.46	0.00	2.033	5.67	4.68	2.5	97.5	0.0	-2.41	0.60	0.86	2.49	3.4	0.003	0.53	0.0	0.04	15.69	0.00	2.458	6.12	2.79	2.0	98.0	0.0	0.70	1.91	0.61	0.87	2.12	10078	1284	5	0	2	0	0	logfile
✔	7VDM	31923	2025-02-13	2021-09-07	2.98	2.90	—	3.0	0.008	1.29	0.0	0.07	13.65	0.01	2.261	4.17	0.22	4.5	95.5	0.0	-2.74	0.66	0.77	3.13	3.0	0.004	0.98	1.0	0.05	16.63	0.00	2.230	8.04	2.37	3.7	96.3	0.0	0.24	1.54	0.66	0.80	2.83	8563	1096	7	0	1	0	0	logfile
✔	7VDL	31922	2025-02-13	2021-09-07	3.22	3.02	—	3.0	0.008	1.16	1.0	0.07	13.81	0.01	1.743	8.31	0.11	4.9	95.1	0.0	-1.82	0.66	0.78	2.75	3.1	0.003	0.72	0.0	0.04	16.31	0.00	2.499	10.18	2.46	4.1	95.9	0.0	0.29	0.45	0.66	0.80	2.54	8598	1100	7	0	1	0	0	logfile
✔	7VDH	31918	2025-02-13	2021-09-07	2.9	3.12	—	3.0	0.011	1.39	0.0	0.08	13.91	0.01	2.232	4.34	0.00	2.8	97.2	0.0	-2.38	0.75	0.83	3.85	3.0	0.003	0.70	0.0	0.04	16.20	0.00	2.535	6.65	2.44	2.1	97.9	0.0	0.67	1.16	0.76	0.85	2.97	8710	1109	6	0	2	0	0	logfile
✔	7S3i	24825	2025-02-12	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.52	0.0	0.04	16.30	0.00	2.526	4.24	1.27	1.8	98.2	0.0	1.69	0.92	0.79	0.89	3.71	8094	1023	5	0	0	0	0	logfile
✔	7VDC	31913	2025-02-14	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.003	0.57	0.0	0.04	16.39	0.00	2.596	10.21	1.62	4.3	95.7	0.0	0.56	0.33	0.63	0.76	1.33	10472	1372	4	0	0	0	0	logfile
✔	7VD2	31904	2025-02-13	2021-09-06	2.53	3.44	—	3.1	0.011	0.91	0.0	0.04	18.20	0.00	2.196	17.85	0.50	3.2	96.8	0.0	1.47	0.63	0.71	5.52	3.1	0.004	0.74	0.0	0.04	18.32	0.00	2.383	6.64	2.11	1.7	98.3	0.0	2.79	1.00	0.66	0.88	4.19	9117	951	18	0	43	0	0	logfile
✔	7PMY	13544	2025-02-14	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.55	0.0	0.04	12.68	0.00	2.482	5.72	1.93	3.2	96.8	0.0	0.88	0.75	0.65	0.79	2.08	10499	659	2	0	0	0	5276	logfile
✔	7S37	24818	2025-02-14	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	14.85	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.3	0.003	0.71	0.0	0.04	17.49	0.00	2.409	12.45	2.28	3.2	96.8	0.0	0.04	2.42	0.77	0.69	0.53	9392	1033	2	46	0	0	0	logfile

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