Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PMY	13544	2025-02-14	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.55	0.0	0.04	12.68	0.00	2.482	5.72	1.93	3.2	96.8	0.0	0.88	0.75	0.65	0.79	2.08	10499	659	2	0	0	0	5276	logfile
✔	7PMW	13542	2025-02-14	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.005	0.62	0.0	0.04	11.79	0.00	2.328	8.47	0.00	5.2	94.8	0.0	0.10	1.20	0.59	0.77	—	10153	643	2	0	0	0	5123	logfile
✔	7PMX	13543	2025-02-14	2021-09-03	3.5	3.85	3.50	3.7	0.003	0.54	0.0	0.04	10.52	0.00	2.134	6.34	2.13	3.2	96.8	0.0	0.60	0.61	0.80	1.97	3.7	0.003	0.57	0.0	0.04	13.13	0.00	2.303	4.71	1.95	3.1	96.9	0.0	1.06	0.97	0.61	0.79	1.47	10417	659	2	0	0	0	5253	logfile
✔	7PMi	13535	2025-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.80	0.01	1.733	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.2	0.003	0.67	0.0	0.04	15.59	0.00	1.951	5.34	0.28	1.4	98.6	0.0	1.84	0.67	0.94	0.88	2.57	10189	1264	7	0	6	0	0	logfile
✔	7PMF	13531	2025-02-14	2021-09-02	3.4	4.29	3.46	3.3	0.010	1.00	1.0	0.06	15.34	0.01	1.731	3.78	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.002	0.59	0.0	0.04	15.24	0.00	1.997	4.03	0.65	1.3	98.7	0.0	2.30	1.28	0.94	0.87	2.33	10125	1256	7	0	6	0	0	logfile
✔	7PMB	13527	2025-02-14	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	1.0	0.06	15.86	0.01	1.732	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.70	0.0	0.04	16.36	0.00	1.962	6.87	1.11	1.6	98.4	0.0	1.60	1.31	0.90	0.85	2.18	10113	1255	7	0	5	0	0	logfile
✔	7S1Y	24812	2025-02-11	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.05	14.94	0.00	2.595	13.76	3.12	7.2	92.6	0.2	-0.26	0.58	0.51	0.64	0.65	6580	948	4	0	6	0	0	logfile
✔	7S1M	24805	2025-02-13	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.54	0.0	0.04	15.97	0.00	2.486	3.39	1.15	1.6	98.4	0.0	1.67	0.92	0.76	0.87	3.48	9160	1168	7	0	1	0	0	logfile
✔	7PM5	13521	2025-02-14	2021-09-02	3.1	3.88	3.10	3.5	0.005	0.83	1.0	0.05	14.89	0.01	1.732	4.50	0.09	0.3	99.7	0.0	-1.20	0.89	0.86	3.36	3.5	0.003	0.63	0.0	0.04	15.15	0.00	2.038	5.10	0.65	1.5	98.5	0.0	1.87	0.68	0.87	0.85	2.79	10171	1263	7	0	5	0	0	logfile
✔	7PML	13538	2025-02-14	2021-09-02	3.3	4.18	3.26	3.2	0.005	0.86	1.0	0.05	15.93	0.01	1.641	3.95	0.09	0.2	99.8	0.0	-1.35	0.91	0.83	2.88	3.3	0.004	0.69	0.0	0.04	16.09	0.00	1.917	4.79	0.83	1.0	99.0	0.0	2.07	0.69	0.94	0.88	2.28	10189	1264	7	0	6	0	0	logfile
✔	7PMJ	13536	2025-02-14	2021-09-02	3.4	4.31	3.37	3.3	0.010	1.11	1.0	0.06	15.90	0.01	1.729	6.69	0.09	0.2	99.8	0.0	-1.97	0.90	0.82	3.01	3.3	0.003	0.61	0.0	0.04	15.74	0.00	1.958	5.09	0.47	1.2	98.8	0.0	1.96	0.72	0.93	0.86	2.66	10085	1251	7	0	6	0	0	logfile
✔	7S1Z	24813	2025-02-11	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.003	0.61	0.0	0.04	14.78	0.00	2.620	8.48	2.14	8.7	91.3	0.0	0.07	1.15	0.49	0.69	1.58	6416	944	2	0	0	0	0	logfile
✔	7PM7	13523	2025-02-14	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	1.0	0.05	15.67	0.01	1.732	5.26	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	3.5	0.003	0.67	0.0	0.04	15.84	0.00	1.988	6.84	0.93	2.1	97.9	0.0	2.07	2.24	0.90	0.84	2.81	10149	1260	7	0	5	0	0	logfile
✔	7PMC	13528	2025-02-14	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	1.0	0.06	16.22	0.01	1.732	7.05	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.003	0.69	0.0	0.04	16.21	0.00	2.001	7.39	1.30	1.3	98.7	0.0	1.57	1.34	0.90	0.82	2.03	10139	1258	7	0	5	0	0	logfile
✔	7PM9	13525	2025-02-14	2021-09-02	3.7	4.22	3.68	3.6	0.005	0.93	1.0	0.05	16.17	0.01	1.731	7.04	0.09	0.2	99.8	0.0	-1.87	0.90	0.80	2.23	3.6	0.003	0.70	0.0	0.04	16.11	0.00	1.939	9.38	1.21	1.9	98.1	0.0	1.18	1.72	0.91	0.84	1.80	10086	1252	7	0	5	0	0	logfile
✔	7PMH	13533	2025-02-14	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.00	2.0	0.06	15.50	0.01	1.732	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.003	0.63	0.0	0.04	15.72	0.00	1.983	5.01	0.37	2.0	98.0	0.0	2.03	0.62	0.94	0.88	2.64	10154	1259	7	0	6	0	0	logfile
✔	7PMA	13526	2025-02-14	2021-09-02	3.6	4.07	3.61	3.5	0.004	0.88	1.0	0.05	15.93	0.01	1.732	6.45	0.09	0.2	99.8	0.0	-1.07	0.90	0.82	2.92	3.5	0.005	0.98	1.0	0.05	15.68	0.00	1.992	8.65	0.84	1.7	98.2	0.1	1.80	1.29	0.91	0.84	2.41	10066	1249	7	0	5	0	0	logfile
✔	7PM8	13524	2025-02-14	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	1.0	0.05	15.71	0.01	1.732	6.40	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.003	0.68	0.0	0.04	16.06	0.00	2.008	6.55	1.11	1.9	98.1	0.0	1.38	1.30	0.90	0.85	2.72	10149	1260	7	0	5	0	0	logfile
✔	7PMG	13532	2025-02-14	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	2.0	0.07	15.70	0.01	1.727	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.62	0.0	0.04	15.56	0.00	1.938	5.24	0.55	1.3	98.7	0.0	2.04	1.67	0.94	0.89	2.79	10189	1264	7	0	6	0	0	logfile
✔	7PMD	13529	2025-02-14	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	1.0	0.06	15.52	0.01	1.728	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.003	0.64	0.0	0.04	15.50	0.00	2.003	4.64	0.65	1.4	98.6	0.0	1.99	1.25	0.93	0.87	2.80	10189	1264	7	0	6	0	0	logfile

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