Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VBY	31885	2025-02-14	2021-09-01	2.54	3.43	—	3.1	0.007	0.85	2.0	0.08	16.97	0.00	2.120	17.97	0.75	2.3	97.5	0.2	1.56	0.64	0.77	4.64	3.1	0.003	0.79	0.0	0.04	17.93	0.01	2.381	6.69	2.61	2.7	97.3	0.0	2.33	1.31	0.65	0.88	4.21	8207	951	19	0	23	0	0	logfile
✔	7PLW	13504	2025-02-14	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	0.0	0.05	15.16	0.01	1.732	4.81	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.65	0.0	0.04	15.96	0.00	2.043	6.40	0.83	1.2	98.8	0.0	1.56	1.29	0.91	0.85	2.30	10139	1263	6	0	3	0	0	logfile
✔	7PLX	13505	2025-02-14	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.82	1.0	0.05	14.95	0.01	1.731	5.85	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.003	0.70	0.0	0.04	15.65	0.00	2.022	7.39	1.20	1.4	98.6	0.0	1.73	1.32	0.91	0.84	2.76	10139	1263	6	0	3	0	0	logfile
✔	7PLV	13503	2025-02-14	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	15.02	0.01	1.732	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.003	0.67	0.0	0.04	16.11	0.00	1.984	6.15	0.92	0.9	99.1	0.0	1.77	0.71	0.92	0.86	2.30	10139	1263	6	0	3	0	0	logfile
✔	7PLT	13501	2025-02-14	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.727	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.004	0.64	0.0	0.04	15.59	0.00	1.937	5.65	1.39	1.0	99.0	0.0	1.76	0.63	0.91	0.88	2.29	10148	1264	6	0	3	0	0	logfile
✔	7VBM	31882	2025-02-14	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.39	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.56	0.0	0.03	28.70	0.00	2.521	6.10	1.61	1.8	98.2	0.0	2.65	0.29	0.68	0.80	2.01	10475	677	10	252	0	0	0	logfile
✔	7VBi	31880	2025-02-13	2021-08-31	3.0	3.19	—	3.2	0.011	1.13	0.0	0.06	14.91	0.01	2.181	4.22	0.81	5.6	94.4	0.0	-3.46	0.66	0.80	3.10	3.2	0.004	0.65	0.0	0.04	16.99	0.00	2.517	4.94	3.05	4.5	95.5	0.0	0.02	1.60	0.66	0.81	2.17	9223	1158	6	0	0	0	0	logfile
✔	7VBH	31879	2025-02-13	2021-08-31	3.0	3.20	—	3.2	0.010	1.12	1.0	0.06	15.92	0.01	1.784	12.22	0.52	4.7	95.3	0.0	-4.06	0.61	0.66	1.58	3.2	0.004	0.69	0.0	0.04	17.43	0.00	2.406	7.22	3.72	4.7	95.3	0.0	0.13	1.45	0.68	0.81	2.53	9116	1141	7	0	1	0	0	logfile
✔	7S05	24784	2025-02-12	2021-08-30	3.1	3.37	3.11	3.4	0.004	0.68	0.0	0.05	16.05	0.00	2.212	8.45	0.00	5.8	94.2	0.0	0.10	0.68	0.81	2.22	3.4	0.004	0.62	0.0	0.05	15.83	0.00	2.480	6.29	1.70	6.1	93.9	0.0	1.12	0.47	0.69	0.85	2.63	7504	874	8	0	16	0	0	logfile
✔	7S06	24785	2025-02-12	2021-08-30	3.3	3.59	3.40	3.6	0.004	0.66	0.0	0.05	16.63	0.00	2.199	7.68	0.00	6.2	93.8	0.0	0.97	0.65	0.78	2.56	3.6	0.003	0.67	0.0	0.05	16.54	0.00	2.405	6.97	2.43	5.7	94.3	0.0	1.01	1.06	0.69	0.83	2.46	7862	918	8	0	14	0	0	logfile
✔	7PLA	13486	2025-02-13	2021-08-30	3.04	4.14	—	3.1	0.008	1.08	0.0	0.09	26.24	0.00	2.216	9.66	0.26	3.3	96.7	0.0	-0.03	0.74	0.61	1.97	3.1	0.003	0.61	0.0	0.03	24.51	0.00	2.464	10.20	2.07	3.7	96.3	0.0	0.90	0.88	0.84	0.80	1.38	8701	437	4	244	0	0	0	logfile
✔	7S0E	24788	2025-02-12	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.78	0.0	0.05	12.94	0.01	2.382	15.82	0.00	9.0	90.8	0.2	-1.99	1.16	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7VAE	31838	2025-02-11	2021-08-29	3.55	4.03	—	4.0	0.003	0.67	0.0	0.04	13.73	0.01	2.212	11.73	0.00	7.5	92.5	0.0	-0.15	0.62	0.76	2.31	4.0	0.003	0.80	0.0	0.05	16.29	0.00	2.521	12.53	3.91	7.1	92.9	0.0	0.05	0.67	0.58	0.77	1.89	5643	736	3	0	0	0	0	logfile
✔	7VAG	31840	2025-02-11	2021-08-29	3.32	3.68	—	3.7	0.002	0.66	0.0	0.04	13.27	0.00	2.109	7.78	0.15	8.3	91.7	0.0	0.41	0.58	0.76	1.46	3.7	0.005	1.18	1.0	0.06	16.31	0.00	2.374	11.36	3.10	7.5	92.5	0.0	0.09	1.35	0.55	0.77	1.94	5697	743	3	0	0	0	0	logfile
✔	7VAF	31839	2025-02-11	2021-08-29	3.11	3.67	—	3.6	0.002	0.56	0.0	0.04	13.38	0.00	2.264	8.84	0.00	7.3	92.7	0.0	0.32	0.63	0.80	2.23	3.6	0.003	0.70	0.0	0.04	15.59	0.00	2.520	10.17	2.50	7.3	92.7	0.0	0.22	0.45	0.56	0.78	2.31	5625	734	3	0	0	0	0	logfile
✔	7VAD	31837	2025-02-11	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.005	0.83	0.0	0.05	16.30	0.00	2.482	13.37	6.81	7.9	92.1	0.0	0.15	0.76	0.61	0.81	2.21	5697	743	3	0	0	0	0	logfile
✔	7VAB	31836	2025-02-13	2021-08-28	3.2	3.44	—	3.4	0.004	0.80	0.0	0.06	9.19	0.01	2.270	4.38	0.00	1.9	98.1	0.0	-2.44	0.55	0.70	2.90	3.4	0.004	0.59	0.0	0.04	14.33	0.00	2.524	5.06	2.38	2.8	97.2	0.0	1.01	0.77	0.66	0.81	2.67	8772	1077	7	0	6	0	0	logfile
✔	7V9X	31829	2025-02-14	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	24.07	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.004	0.62	0.0	0.04	24.34	0.00	2.521	5.20	1.47	3.6	96.4	0.0	0.50	0.88	0.73	0.85	2.69	10550	760	9	210	0	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7RZT	24777	2025-02-10	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.004	0.36	0.0	0.03	15.45	0.00	2.447	4.84	0.00	0.3	99.7	0.0	5.95	0.25	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile

• ← previous
• Page 181 of 243
• next →