Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7RZT	24777	2025-02-10	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.004	0.36	0.0	0.03	15.45	0.00	2.447	4.84	0.00	0.3	99.7	0.0	5.95	0.25	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7V9X	31829	2025-02-14	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	24.07	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.004	0.62	0.0	0.04	24.34	0.00	2.521	5.20	1.47	3.6	96.4	0.0	0.50	0.88	0.73	0.85	2.69	10550	760	9	210	0	0	0	logfile
✔	7RZR	24775	2025-02-10	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.004	0.35	0.0	0.03	15.17	0.00	2.631	4.44	0.35	0.0	100.0	0.0	5.95	0.32	0.82	0.83	3.37	2448	324	6	0	0	0	0	logfile
✔	7V9M	31825	2025-02-12	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.52	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.003	0.63	0.0	0.04	15.61	0.00	2.468	7.79	3.08	2.9	97.1	0.0	0.80	1.16	0.73	0.75	2.08	8138	1029	6	0	0	0	0	logfile
✔	7V9L	31824	2025-02-12	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.88	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.8	0.005	0.97	1.0	0.05	15.51	0.00	2.292	8.75	2.07	2.1	97.9	0.0	0.83	0.47	0.77	0.79	3.00	8047	1019	5	0	0	0	0	logfile
✔	7V9U	31827	2025-02-13	2021-08-26	3.12	3.31	—	3.2	0.004	0.63	0.0	0.04	25.35	0.01	2.180	10.84	0.00	6.2	93.8	0.0	-1.53	0.75	0.78	3.58	3.2	0.003	0.61	0.0	0.04	25.28	0.00	2.504	8.70	2.36	5.2	94.8	0.0	-0.80	1.22	0.76	0.81	3.55	9354	618	8	209	0	0	0	logfile
✔	7RYQ	24745	2025-02-11	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.004	0.79	0.0	0.05	13.90	0.01	2.391	16.62	0.00	7.2	92.8	0.0	-0.08	1.21	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7RYC	24733	2025-02-12	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.003	0.65	0.0	0.04	15.85	0.00	2.312	2.43	1.88	2.9	97.1	0.0	-0.33	0.46	0.81	0.80	2.55	8277	1125	7	0	2	0	0	logfile
✔	7V8i	31802	2025-02-13	2021-08-23	3.6	3.75	—	3.7	0.005	0.87	0.0	0.05	15.81	0.01	2.007	11.55	1.36	3.9	95.8	0.3	-0.76	0.59	0.61	1.25	3.7	0.003	0.68	0.0	0.04	17.22	0.00	2.010	11.34	2.41	4.2	95.7	0.1	-0.25	1.15	0.67	0.72	1.08	9388	1261	6	0	4	0	0	logfile
✔	7PiU	13453	2025-02-12	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	0.0	0.09	14.84	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.523	4.24	2.07	2.0	97.9	0.1	1.92	0.93	0.69	0.88	4.45	7788	974	14	0	3	88	0	logfile
✔	7V8M	31804	2025-02-13	2021-08-23	4.2	4.31	—	4.2	0.004	0.81	0.0	0.05	13.86	0.01	2.046	15.98	0.10	4.1	95.9	0.0	-0.28	0.67	0.72	—	4.2	0.003	0.75	0.0	0.05	14.09	0.00	2.466	11.76	0.00	4.2	95.8	0.0	0.27	0.63	0.68	0.78	—	9338	1263	4	0	0	0	0	logfile
✔	7RXH	24731	2025-02-11	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	24.73	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.005	0.55	0.0	0.04	16.72	0.00	2.069	11.76	0.56	2.7	97.3	0.0	2.47	1.52	0.60	0.91	4.30	5631	626	2	0	18	24	48	logfile
✔	7PiV	13454	2025-02-12	2021-08-23	2.86	2.87	—	3.2	0.013	1.71	1.0	0.10	13.14	0.00	2.234	3.79	0.86	5.7	94.1	0.2	-2.91	0.70	0.84	3.61	3.2	0.003	0.57	0.0	0.04	15.08	0.00	2.387	5.88	2.20	3.2	96.8	0.0	1.13	0.96	0.68	0.84	2.80	7814	976	13	0	2	115	0	logfile
✔	7RXC	24728	2025-02-14	2021-08-22	3.2	2.84	—	3.2	0.006	0.78	0.0	0.04	14.27	0.01	2.089	9.58	0.00	2.3	97.7	0.0	1.18	0.66	0.79	2.95	3.2	0.004	0.57	0.0	0.04	15.77	0.00	2.413	7.59	1.50	2.8	97.2	0.0	1.45	0.35	0.63	0.81	2.64	9360	1178	7	0	6	0	0	logfile
✔	7V87	31792	2025-02-11	2021-08-22	3.3	3.93	—	3.6	0.003	0.65	0.0	0.05	16.49	0.00	2.167	6.58	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	3.6	0.004	0.61	0.0	0.04	15.87	0.00	2.518	4.41	1.57	5.9	94.1	0.0	0.01	0.35	0.79	0.87	2.34	6617	797	6	0	12	0	0	logfile
✔	7RXA	24726	2025-02-13	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	17.17	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.003	0.55	0.0	0.04	14.66	0.00	2.469	2.64	1.22	4.8	95.2	0.0	1.27	0.34	0.66	0.85	2.89	8694	1156	4	0	8	0	0	logfile
✔	7RXB	24727	2025-02-13	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.56	0.0	0.04	14.86	0.00	2.607	1.44	0.50	4.1	95.9	0.0	0.31	0.28	0.63	0.88	3.05	8506	1096	4	0	8	0	0	logfile
✔	7V80	31785	2025-02-11	2021-08-22	3.9	4.10	—	4.0	0.004	0.65	0.0	0.05	14.72	0.00	2.120	8.76	0.00	6.2	93.8	0.0	-0.76	0.65	0.72	1.58	4.0	0.003	0.70	0.0	0.05	16.19	0.00	2.313	8.06	2.29	6.3	93.7	0.0	-0.42	1.16	0.67	0.75	1.27	6609	797	7	0	11	0	0	logfile
✔	7V84	31789	2025-02-11	2021-08-22	3.0	3.81	—	3.5	0.003	0.54	0.0	0.04	16.31	0.00	2.199	5.95	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.61	0.0	0.04	15.61	0.00	2.454	3.94	0.57	4.8	95.2	0.0	0.01	0.34	0.78	0.84	3.10	6636	797	9	0	13	0	0	logfile

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