Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V84	31789	2025-02-11	2021-08-22	3.0	3.81	—	3.5	0.003	0.54	0.0	0.04	16.31	0.00	2.199	5.95	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.61	0.0	0.04	15.61	0.00	2.454	3.94	0.57	4.8	95.2	0.0	0.01	0.34	0.78	0.84	3.10	6636	797	9	0	13	0	0	logfile
✔	7RXB	24727	2025-02-13	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.56	0.0	0.04	14.86	0.00	2.607	1.44	0.50	4.1	95.9	0.0	0.31	0.28	0.63	0.88	3.05	8506	1096	4	0	8	0	0	logfile
✔	7RX3	24723	2025-02-14	2021-08-21	3.3	3.49	—	3.4	0.009	1.37	0.0	0.06	22.83	0.01	2.327	6.98	0.20	7.5	92.5	0.0	-3.98	0.74	0.84	3.22	3.4	0.004	0.61	0.0	0.04	18.55	0.00	2.482	5.46	3.05	7.0	93.0	0.0	0.64	0.42	0.73	0.86	2.56	10130	1182	4	0	16	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	7RX2	24722	2025-02-14	2021-08-21	2.7	2.29	—	2.7	0.010	1.08	0.0	0.05	18.46	0.00	2.196	11.76	0.19	5.6	94.4	0.0	-4.48	0.66	0.86	4.53	2.8	0.003	0.54	0.0	0.04	17.55	0.00	2.174	16.68	1.98	4.4	95.6	0.0	1.92	0.84	0.66	0.87	3.56	10390	1230	6	0	18	6	12	logfile
✔	7V68	31738	2025-02-14	2021-08-20	3.4	2.57	—	3.3	0.007	0.83	1.0	0.05	12.84	0.02	2.151	16.41	0.00	3.1	96.8	0.1	-0.44	0.71	0.69	1.57	3.3	0.004	0.72	0.0	0.05	15.66	0.00	2.386	16.53	4.36	3.5	96.5	0.0	-0.19	0.46	0.72	0.72	1.56	8577	1122	6	0	2	0	0	logfile
✔	7RWJ	24717	2025-02-14	2021-08-20	3.5	3.71	—	3.7	0.008	1.17	4.0	0.07	16.67	0.01	2.258	9.32	1.35	5.1	94.6	0.3	-3.76	0.78	0.80	2.26	3.7	0.003	0.64	0.0	0.04	16.32	0.00	2.319	6.49	2.60	4.5	95.5	0.0	0.90	0.47	0.78	0.80	2.05	9906	1212	4	0	8	0	0	logfile
✔	7V69	31739	2025-02-14	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.003	0.64	0.0	0.04	15.12	0.00	2.541	11.62	2.79	4.4	95.6	0.0	-1.04	0.45	0.70	0.69	2.12	8539	1122	5	0	0	0	0	logfile
✔	7V6A	31740	2025-02-14	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.004	0.71	0.0	0.04	16.59	0.00	2.507	10.92	4.34	4.2	95.8	0.0	-1.04	0.46	0.71	0.70	1.74	8584	1122	6	0	1	0	0	logfile
✔	7V6Y	31753	2025-02-12	2021-08-20	3.5	3.75	—	3.8	0.014	1.85	9.0	0.13	16.47	0.01	2.258	12.19	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.003	0.70	0.0	0.04	15.44	0.00	2.406	7.08	3.83	4.7	95.3	0.0	0.86	1.18	0.63	0.75	1.99	7484	990	3	0	8	0	0	logfile
✔	7RX0	24721	2025-02-14	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.61	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.004	0.91	0.0	0.05	17.17	0.01	1.018	15.41	2.93	4.5	95.5	0.0	-0.31	0.78	0.59	0.81	0.55	9673	1182	7	0	83	0	0	logfile
✔	7RW9	24711	2025-02-14	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.83	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.004	0.67	0.0	0.04	14.93	0.00	2.479	7.58	1.80	4.8	95.0	0.3	1.37	0.53	0.89	0.84	0.91	10365	1456	4	0	0	0	0	logfile
✔	7PHG	13415	2025-02-11	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.72	0.0	0.05	13.56	0.00	2.407	17.00	0.00	14.3	85.7	0.0	-3.61	1.25	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	7RUG	24705	2025-02-11	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.003	0.52	0.0	0.04	13.21	0.00	2.398	11.43	0.00	1.6	98.4	0.0	3.04	1.26	0.60	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7V5C	31722	2025-02-13	2021-08-17	3.2	3.83	—	3.7	0.009	0.63	0.0	0.04	13.83	0.00	1.766	28.98	0.00	6.7	93.3	0.0	-6.06	0.66	0.86	2.72	3.7	0.003	0.68	0.0	0.04	16.01	0.00	1.910	5.52	3.11	3.9	96.1	0.0	-0.88	0.97	0.65	0.85	2.52	8916	1144	4	0	6	0	0	logfile
✔	7V5D	31723	2025-02-13	2021-08-17	3.4	4.15	—	4.0	0.010	0.94	0.0	0.05	16.06	0.01	2.215	8.62	0.63	8.5	91.5	0.0	-2.76	0.65	0.81	1.75	4.0	0.003	0.64	0.0	0.04	17.31	0.00	2.567	6.93	3.06	3.6	96.4	0.0	0.88	0.47	0.65	0.80	1.37	8822	1140	3	0	1	0	0	logfile
✔	7RU6	24698	2025-02-11	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.92	0.00	2.488	7.56	0.00	1.6	98.4	0.0	3.52	0.75	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	7RU4	24696	2025-02-11	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.65	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.77	0.0	0.05	14.64	0.00	2.530	7.05	3.01	6.2	93.8	0.0	-0.80	1.33	0.76	0.82	3.11	3382	428	5	0	4	0	0	logfile
✔	7RU8	24699	2025-02-10	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.39	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.004	0.82	0.0	0.05	15.11	0.00	2.508	11.96	3.78	8.4	91.6	0.0	-1.56	1.49	0.78	0.75	0.95	3198	405	5	0	3	0	0	logfile
✔	7RTV	24690	2025-02-10	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.93	0.0	0.05	17.54	0.00	2.376	13.34	5.19	1.9	98.1	0.0	3.30	0.51	0.41	0.63	0.28	2881	366	3	0	6	0	0	logfile

• ← previous
• Page 183 of 243
• next →