Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iUP	60911	2025-02-11	2024-07-22	3.3	3.49	3.28	3.5	0.005	0.73	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.003	0.56	0.0	0.04	17.15	0.00	2.475	6.46	2.75	3.3	96.7	0.0	0.61	0.24	0.67	0.85	2.12	6420	787	3	0	2	0	0	logfile
✔	9CRA	45856	2025-02-14	2024-07-21	2.34	2.18	2.35	2.0	0.003	0.60	0.0	0.05	12.61	0.01	2.203	10.41	0.00	7.6	92.4	0.0	-0.84	0.82	0.82	3.02	1.9	0.005	0.69	0.0	0.05	15.53	0.01	2.484	7.41	3.67	7.3	92.7	0.0	-0.64	0.37	0.83	0.83	2.33	9842	1247	8	0	4	0	0	logfile
✔	9CR8	45854	2025-02-13	2024-07-21	3.8	3.66	3.65	3.7	0.003	0.49	0.0	0.04	12.79	0.00	2.219	7.50	0.22	6.6	93.4	0.0	0.48	0.63	0.77	1.73	3.7	0.003	0.59	0.0	0.04	15.67	0.00	2.521	7.84	3.37	6.2	93.7	0.1	0.80	0.48	0.65	0.77	1.11	8664	1087	2	0	15	0	0	logfile
✔	9CR3	45831	2025-02-13	2024-07-20	3.18	2.56	3.18	2.2	0.003	0.62	0.0	0.05	11.75	0.00	2.045	10.49	0.00	6.0	94.0	0.0	-0.53	0.76	0.81	2.93	2.2	0.003	0.64	0.0	0.05	15.53	0.00	2.518	9.74	2.95	10.9	89.1	0.0	-0.22	0.93	0.76	0.82	2.46	9299	1200	4	0	0	0	0	logfile
✔	9iU1	60886	2025-02-14	2024-07-20	4.3	4.47	4.35	4.4	0.003	0.60	0.0	0.04	17.14	0.00	2.241	9.47	0.00	8.5	91.5	0.0	0.02	0.64	0.68	—	4.4	0.003	0.67	0.0	0.04	14.84	0.00	2.417	9.16	0.00	8.7	91.3	0.0	-0.55	0.69	0.65	0.68	—	6603	790	8	0	14	0	0	logfile
✔	9CR4	45832	2025-02-13	2024-07-20	2.81	2.35	2.86	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.67	0.0	0.05	14.54	0.01	2.323	9.72	3.50	7.6	92.4	0.0	0.01	0.57	0.74	0.75	2.28	9099	1179	4	0	0	0	0	logfile
✔	9CQ7	45810	2025-02-11	2024-07-19	3.21	3.47	3.19	3.5	0.003	0.62	0.0	0.05	14.05	0.00	2.131	12.25	0.00	5.8	94.2	0.0	-0.70	0.68	0.74	2.52	3.4	0.004	0.67	0.0	0.05	16.04	0.00	2.476	8.78	4.16	5.5	94.5	0.0	-1.00	1.01	0.67	0.77	2.47	5222	660	7	0	4	0	0	logfile
✔	9G69	51096	2025-02-11	2024-07-18	4.84	4.50	4.73	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.007	1.14	0.0	0.05	10.65	0.01	2.337	12.27	0.00	28.1	71.6	0.3	-5.07	1.20	0.73	0.75	—	5053	1028	5	0	1	0	0	logfile
✔	9G5K	51088	2025-02-11	2024-07-17	2.87	2.98	2.85	2.9	0.004	0.60	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.67	0.0	0.04	16.37	0.00	2.489	5.71	3.52	2.8	97.2	0.0	2.13	0.91	0.64	0.84	2.71	4040	507	3	0	1	0	0	logfile
✔	9Coo	45787	2025-02-12	2024-07-17	3.73	4.04	3.71	3.9	0.003	0.66	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.004	0.74	0.0	0.04	16.95	0.00	2.236	11.11	6.61	8.2	91.8	0.0	-2.17	2.38	0.79	0.75	0.72	7493	1028	8	0	6	0	0	logfile
✔	9Co7	45772	2025-02-11	2024-07-16	3.32	4.05	3.32	3.9	0.005	1.07	0.0	0.06	13.46	0.01	2.215	5.41	0.18	8.4	90.9	0.8	-2.76	0.74	0.82	2.87	3.8	0.004	0.87	0.0	0.05	15.35	0.01	2.483	10.62	2.14	8.7	90.9	0.5	-1.84	1.38	0.75	0.84	3.12	5220	666	4	0	0	0	0	logfile
✔	9iRX	60824	2025-02-11	2024-07-16	3.0	3.17	2.86	3.2	0.009	0.58	0.0	0.03	11.28	0.00	2.197	7.04	0.56	2.4	97.6	0.0	2.29	0.65	0.82	3.59	3.2	0.003	0.66	0.0	0.04	15.02	0.00	2.642	8.17	2.22	1.5	98.5	0.0	2.26	0.36	0.61	0.82	2.77	3509	469	2	0	1	0	0	logfile
✔	9Co9	45774	2025-02-11	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.004	0.78	0.0	0.05	15.55	0.00	2.396	8.91	3.58	5.2	94.5	0.3	-1.37	2.38	0.75	0.83	2.61	5198	661	4	0	0	0	0	logfile
✔	9iRW	60823	2025-02-11	2024-07-16	3.26	3.49	3.15	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.66	0.0	0.04	14.50	0.00	2.500	8.40	4.96	4.9	95.1	0.0	-0.63	0.29	0.61	0.82	2.37	3808	499	2	0	1	0	0	logfile
✔	9CMi	45749	2025-02-12	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.003	0.88	0.0	0.04	15.67	0.00	2.303	8.19	2.43	3.5	96.5	0.0	-0.11	0.96	0.76	0.78	2.60	7877	1025	7	0	1	2	0	logfile
✔	9CMP	45752	2025-02-11	2024-07-15	3.3	3.63	3.24	3.4	0.004	0.77	0.0	0.05	14.58	0.00	2.141	1.52	0.46	3.9	96.1	0.0	-1.15	0.73	0.66	2.05	3.4	0.003	0.61	0.0	0.04	16.17	0.00	2.274	7.68	2.52	3.5	96.5	0.0	-0.31	1.57	0.76	0.70	1.75	6211	768	4	43	1	0	0	logfile
✔	9CMH	45748	2025-02-11	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.84	0.0	0.04	15.66	0.00	2.529	22.08	3.84	5.2	94.8	0.0	-0.98	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	9CNY	45766	2025-02-14	2024-07-15	4.0	4.00	3.94	4.0	0.003	0.63	0.0	0.04	13.80	0.01	2.003	6.08	0.00	3.3	96.7	0.0	0.08	0.70	0.76	—	4.0	0.005	0.71	0.0	0.04	16.29	0.00	2.296	10.35	3.33	4.1	95.9	0.0	-0.11	1.80	0.73	0.79	—	10410	1333	5	0	0	0	0	logfile
✔	9CLP	45728	2025-02-11	2024-07-12	3.43	3.82	3.39	3.8	0.002	0.52	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.002	0.54	0.0	0.04	14.05	0.00	2.287	4.42	1.82	3.0	97.0	0.0	0.21	0.67	0.66	0.79	2.06	5035	650	5	0	11	0	0	logfile
✔	9G2W	50986	2025-02-11	2024-07-11	3.6	4.37	3.63	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.65	0.0	0.03	16.61	0.00	2.497	7.53	1.70	1.1	98.9	0.0	5.88	0.72	0.68	0.84	0.72	3838	478	2	0	0	0	0	logfile

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