Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9G2U	50984	2025-02-11	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.79	0.00	2.572	6.44	1.55	0.7	99.3	0.0	6.39	4.28	0.70	0.83	0.49	3634	456	2	0	0	0	0	logfile
✔	9CK8	45644	2025-02-14	2024-07-08	3.04	3.30	3.16	3.3	0.005	0.89	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.005	0.66	0.0	0.05	13.62	0.00	2.474	4.61	2.11	2.9	97.1	0.0	-0.15	0.83	0.64	0.84	4.52	9966	1001	30	0	283	0	0	logfile
✔	9iNY	60712	2025-02-13	2024-07-08	3.6	3.79	3.23	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.005	0.69	0.0	0.05	14.11	0.00	2.566	9.26	2.33	9.0	90.1	0.9	-2.75	1.37	0.66	0.85	2.32	8793	1125	3	0	0	0	0	logfile
✔	9CK7	45643	2025-02-14	2024-07-08	3.45	3.77	3.60	3.8	0.005	0.96	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.005	1.08	2.0	0.04	14.25	0.01	2.291	9.23	3.85	4.8	95.2	0.0	-0.61	0.87	0.67	0.80	2.79	10026	1001	32	0	292	0	0	logfile
✔	9CK3	45639	2025-02-11	2024-07-08	2.04	2.11	1.97	2.0	0.004	0.64	0.0	0.05	19.96	0.00	2.532	3.88	2.08	1.5	98.5	0.0	-0.15	0.59	0.90	8.74	2.0	0.008	0.74	0.0	0.07	19.13	0.00	2.632	3.46	4.86	4.5	95.5	0.0	-0.58	0.32	0.59	0.91	8.59	5748	840	12	0	0	0	0	logfile
✔	9iND	60703	2025-02-12	2024-07-06	2.88	2.01	2.90	1.9	0.011	1.09	0.0	0.06	11.53	0.01	2.266	5.06	0.26	4.9	95.1	0.0	-3.25	0.76	0.77	5.00	1.9	0.003	0.65	0.0	0.04	13.65	0.00	2.538	7.63	2.34	3.8	96.2	0.0	-0.22	1.22	0.77	0.78	3.96	7644	1010	7	0	9	0	0	logfile
✔	9CJ8	45625	2025-02-14	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.08	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.004	0.85	0.0	0.05	16.06	0.00	2.414	13.63	3.44	4.4	95.6	0.0	-0.91	0.58	0.67	0.79	1.63	9750	989	22	0	269	0	0	logfile
✔	9iMH	60689	2025-02-12	2024-07-03	4.2	3.96	3.75	4.1	0.006	1.06	7.0	0.08	15.41	0.01	2.171	19.62	0.70	12.0	84.5	3.5	-2.10	0.51	0.74	—	4.1	0.005	0.96	0.0	0.05	15.50	0.01	2.506	15.67	0.00	13.6	84.8	1.6	-1.61	0.82	0.51	0.78	—	7674	960	6	0	0	0	0	logfile
✔	9CiA	45615	2025-02-12	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.004	0.72	0.0	0.04	16.11	0.00	2.450	13.20	4.83	4.8	95.2	0.0	-0.85	0.58	0.60	0.75	1.72	7918	1025	13	0	1	0	0	logfile
✔	9CHU	45602	2025-02-12	2024-07-02	3.49	3.92	3.50	3.9	0.006	0.86	3.0	0.06	14.03	0.00	2.165	7.85	0.41	6.6	93.4	0.0	-1.06	0.71	0.80	2.51	3.9	0.003	0.67	0.0	0.04	15.95	0.00	2.440	4.32	2.85	5.8	94.2	0.0	-0.09	0.46	0.71	0.83	1.47	7009	887	5	0	2	0	0	logfile
✔	9Ci8	45614	2025-02-14	2024-07-02	3.01	3.35	3.04	3.4	0.004	0.80	0.0	0.05	16.95	0.01	2.258	6.33	4.93	3.7	96.3	0.0	-0.84	0.59	0.67	1.46	3.4	0.005	0.71	1.0	0.04	17.06	0.00	2.309	11.84	5.63	4.7	95.3	0.0	-0.19	0.99	0.60	0.71	1.52	10466	1382	12	0	0	0	0	logfile
✔	9CHV	45603	2025-02-11	2024-07-02	3.95	4.29	3.77	4.3	0.009	1.53	33.0	0.11	15.28	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.003	0.75	0.0	0.04	16.92	0.00	2.384	8.03	3.19	5.2	94.8	0.0	-0.83	1.52	0.70	0.75	1.13	6644	873	4	0	1	0	0	logfile
✔	9CHT	45601	2025-02-12	2024-07-02	3.54	3.73	3.59	3.7	0.003	0.66	0.0	0.04	14.85	0.01	2.203	16.59	0.32	9.9	90.0	0.1	-1.62	0.54	0.47	0.88	3.7	0.003	0.66	0.0	0.04	16.54	0.00	2.448	13.45	1.16	9.5	90.4	0.1	-1.31	0.97	0.55	0.49	0.68	8445	1034	3	0	0	0	0	logfile
✔	9CHX	45604	2025-02-12	2024-07-02	3.5	3.91	3.87	3.9	0.004	0.66	0.0	0.04	14.88	0.00	2.146	9.43	0.00	4.9	95.1	0.0	-0.53	0.65	0.68	2.27	3.9	0.003	0.63	0.0	0.04	16.51	0.00	2.488	6.83	2.88	3.8	96.2	0.0	-0.03	0.45	0.65	0.72	1.34	7129	889	5	0	2	0	0	logfile
✔	9iMA	60686	2025-02-12	2024-07-02	2.65	3.02	2.78	3.0	0.003	0.70	0.0	0.04	12.29	0.01	2.292	4.08	0.00	4.3	95.7	0.0	0.12	0.57	0.86	3.50	3.0	0.003	0.58	0.0	0.04	14.59	0.00	2.542	4.28	1.58	4.5	95.4	0.1	1.14	0.38	0.58	0.88	3.79	7472	933	6	0	6	0	0	logfile
✔	9iM6	60685	2025-02-13	2024-07-02	3.21	3.45	3.24	3.4	0.003	0.62	0.0	0.04	18.98	0.01	2.142	7.20	0.20	6.4	93.2	0.4	1.15	0.65	0.84	1.89	3.4	0.003	0.57	0.0	0.04	19.02	0.00	2.571	6.31	1.93	6.5	93.3	0.3	1.83	0.29	0.64	0.83	1.74	8982	1134	2	0	0	0	0	logfile
✔	9CGZ	45589	2025-02-12	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.65	0.0	0.05	17.79	0.00	2.481	5.13	1.56	7.7	92.3	0.0	-2.43	0.97	0.39	0.79	5.02	6822	438	6	0	0	0	3480	logfile
✔	9CGX	45588	2025-02-12	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.40	0.00	2.529	3.74	1.28	7.6	92.1	0.2	-2.80	1.38	0.35	0.77	4.81	6960	444	6	0	0	0	3540	logfile
✔	9FVD	50803	2025-02-14	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.04	1.0	0.19	22.29	0.01	1.716	36.24	3.16	5.3	94.7	0.0	-0.29	2.28	0.43	0.72	1.68	10146	1143	8	54	0	0	0	logfile
✔	9iK4	60648	2025-02-14	2024-06-26	3.34	3.55	3.36	3.5	0.008	1.41	1.0	0.26	19.37	0.01	1.881	9.85	0.00	14.1	85.9	0.1	-6.52	0.55	0.67	2.00	3.5	0.005	0.86	0.0	0.05	18.65	0.00	2.423	10.30	1.67	13.0	87.0	0.0	-3.91	0.65	0.59	0.77	1.95	10114	1214	4	0	4	0	0	logfile

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