Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZX6	60539	2025-03-05	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.006	0.79	0.0	0.05	14.26	0.00	2.631	6.51	1.52	10.6	89.4	0.0	-3.65	0.72	0.35	0.84	5.17	3468	456	6	0	0	0	0	logfile
✔	9C91	45359	2025-03-13	2024-06-13	2.84	2.98	2.80	39.0	0.004	0.66	0.0	0.04	18.11	0.00	2.194	11.02	2.64	3.5	96.3	0.2	0.30	0.06	0.00	0.50	39.0	0.004	0.81	0.0	0.05	18.67	0.01	2.256	14.94	3.63	5.2	94.7	0.1	-0.21	1.28	0.09	0.04	0.31	8784	1088	4	0	6	0	0	logfile
✔	8ZWL	60532	2025-03-05	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.004	0.66	0.0	0.05	13.64	0.00	2.615	4.67	2.27	2.3	97.7	0.0	-3.02	0.51	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZWK	60530	2025-03-05	2024-06-13	3.4	2.76	2.78	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.60	0.0	0.05	17.06	0.00	2.600	6.09	6.67	8.2	91.8	0.0	-3.62	1.50	0.36	0.82	4.52	2760	378	8	6	0	0	0	logfile
✔	8ZWM	60533	2025-03-05	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.003	0.56	0.0	0.05	14.66	0.00	2.611	3.43	1.53	2.5	97.5	0.0	-2.45	1.25	0.33	0.91	6.11	3435	453	6	0	0	0	0	logfile
✔	9FoR	50628	2025-03-05	2024-06-12	2.75	2.54	2.60	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.95	0.0	0.05	16.02	0.01	2.621	0.77	1.90	7.9	92.1	0.0	-5.31	0.41	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	9C7U	45294	2025-03-12	2024-06-11	3.65	4.10	3.62	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.63	0.0	0.04	17.53	0.00	2.539	10.38	5.96	9.6	90.4	0.0	-0.60	0.31	0.69	0.83	1.94	6848	896	4	0	1	0	0	logfile
✔	9FoF	50621	2025-03-06	2024-06-11	2.9	2.55	2.79	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.004	0.89	0.0	0.04	17.53	0.00	2.621	2.01	1.56	7.5	92.5	0.0	-4.72	1.98	0.51	0.89	5.51	4176	600	12	0	0	0	0	logfile
✔	9FND	50590	2025-03-06	2024-06-10	4.0	4.20	3.92	4.1	0.002	0.42	0.0	0.04	8.17	0.00	2.291	6.54	0.59	2.6	97.4	0.0	1.57	0.59	0.74	—	4.1	0.003	0.65	0.0	0.04	14.43	0.00	2.340	10.01	2.56	3.4	96.6	0.0	0.05	3.95	0.61	0.74	—	4914	647	2	0	0	0	0	logfile
✔	9FNB	50587	2025-03-06	2024-06-10	2.64	2.64	2.35	2.6	0.008	1.34	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.005	0.68	0.0	0.05	15.61	0.00	2.510	5.82	0.79	6.4	93.6	0.0	-2.31	0.86	0.50	0.92	6.35	4568	540	8	0	16	0	0	logfile
✔	8ZUF	60483	2025-03-06	2024-06-09	3.31	3.54	3.33	3.6	0.011	1.33	0.0	0.09	13.43	0.01	2.400	1.80	0.24	1.2	98.5	0.3	0.21	0.67	0.73	3.59	3.6	0.003	0.57	0.0	0.04	12.79	0.00	2.569	7.49	1.91	1.1	98.9	0.0	2.05	1.09	0.65	0.75	2.51	5745	770	10	0	19	0	0	logfile
✔	9C6i	45247	2025-03-12	2024-06-07	2.56	3.19	2.64	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9C6K	45249	2025-03-05	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.006	0.67	0.0	0.04	25.57	0.00	1.888	12.20	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	9C6J	45248	2025-03-12	2024-06-07	2.41	3.08	2.54	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.66	0.0	0.04	24.42	0.01	1.888	8.06	0.00	0.0	0.0	0.0	—	0.24	0.86	0.90	—	8345	0	2	387	21	0	0	logfile
✔	8ZSZ	60435	2025-03-06	2024-06-06	3.59	3.78	3.46	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.7	0.003	0.66	0.0	0.04	16.62	0.00	1.987	13.73	3.23	2.3	97.7	0.0	1.34	0.76	0.59	0.76	1.11	4754	630	4	0	8	0	0	logfile
✔	9C58	45207	2025-03-12	2024-06-06	4.7	4.87	4.70	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.004	0.71	0.0	0.04	6.58	0.00	1.924	2.25	0.00	8.8	91.2	0.0	-1.22	1.63	0.76	0.72	—	7954	1590	6	0	2	0	0	logfile
✔	8ZSB	60410	2025-03-06	2024-06-05	3.26	3.46	3.05	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.003	0.55	0.0	0.04	16.05	0.00	2.078	9.93	1.52	3.7	96.3	0.0	2.25	0.52	0.60	0.82	2.36	4798	614	4	0	2	0	0	logfile
✔	8ZSJ	60417	2025-03-12	2024-06-05	2.8	3.25	2.87	3.2	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.003	0.56	0.0	0.04	15.62	0.00	2.498	6.92	1.73	2.7	97.3	0.0	1.10	0.99	0.62	0.84	3.28	8118	1035	6	0	1	4	0	logfile
✔	8ZSP	60423	2025-03-12	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.003	0.62	0.0	0.04	16.22	0.00	2.534	7.71	1.51	2.5	97.5	0.0	0.75	0.91	0.75	0.79	2.28	8076	1033	6	0	1	0	0	logfile
✔	8ZRR	60403	2025-03-05	2024-06-05	3.61	2.82	3.10	2.7	0.008	0.99	0.0	0.05	16.46	0.01	1.345	8.98	3.81	3.5	95.7	0.8	0.51	0.58	0.70	1.24	2.7	0.003	0.79	0.0	0.05	16.55	0.00	2.386	8.60	4.26	2.8	97.2	0.0	1.43	0.75	0.59	0.73	1.72	4065	516	4	0	0	0	0	logfile

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