Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iKA	35507	2023-04-25	2023-02-28	2.75	2.89	2.81	2.9	0.008	1.22	0.0	0.07	12.95	0.02	2.225	4.42	0.00	1.5	98.5	0.0	-0.45	0.82	0.88	4.57	2.9	0.005	0.55	0.0	0.04	16.79	0.00	2.145	3.77	1.06	1.4	98.6	0.0	1.61	1.50	0.82	0.90	4.07	122040	15900	60	0	0	0	0	logfile
✔	8G88	29843	2023-04-23	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.006	0.68	0.0	0.04	29.42	0.00	2.075	29.38	0.00	2.5	97.5	0.0	1.55	2.54	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	8G8G	29850	2023-04-23	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	8G8B	29845	2023-04-23	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	29.04	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.005	0.70	0.0	0.04	29.28	0.00	2.175	22.94	0.00	2.8	97.2	0.0	0.84	1.95	0.88	0.80	—	14067	902	11	336	0	0	0	logfile
✔	8G8E	29846	2023-04-19	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.65	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.003	0.63	0.0	0.03	28.39	0.00	2.243	15.67	0.00	2.9	97.1	0.0	-0.23	1.84	0.91	0.85	—	2464	140	3	64	0	0	0	logfile
✔	8CK1	16689	2023-04-22	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.8	0.003	0.70	0.0	0.05	17.90	0.00	2.215	14.33	0.30	9.0	91.0	0.0	-1.64	0.55	0.42	0.81	1.82	12580	1616	6	0	0	0	0	logfile
✔	8CK0	16688	2023-04-20	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.9	0.003	0.68	0.0	0.04	17.61	0.00	2.237	10.99	0.24	4.0	96.0	0.0	2.20	0.72	0.18	0.78	1.71	3762	478	1	0	0	0	0	logfile
✔	8iD8	35359	2023-04-20	2023-02-12	3.0	3.25	3.12	3.3	0.004	0.66	0.0	0.04	13.18	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.003	0.60	0.0	0.04	15.71	0.00	2.175	7.16	2.77	3.0	97.0	0.0	0.47	0.41	0.62	0.78	2.33	8635	1137	6	0	1	0	0	logfile
✔	8iD6	35358	2023-04-21	2023-02-12	2.8	2.99	2.85	3.0	0.004	0.67	0.0	0.05	11.40	0.01	2.180	7.91	0.00	0.7	99.3	0.0	0.86	0.68	0.81	3.66	3.0	0.002	0.58	0.0	0.04	14.24	0.00	2.134	4.79	1.52	2.1	97.9	0.0	1.31	0.52	0.67	0.83	3.38	8727	1139	6	0	1	0	0	logfile
✔	8G59	29736	2023-04-20	2023-02-12	2.64	2.58	—	2.9	0.005	0.76	1.0	0.05	12.18	0.01	1.930	10.26	0.22	3.8	96.1	0.1	-0.15	0.82	0.76	2.19	2.9	0.007	0.75	0.0	0.05	15.37	0.01	2.117	10.26	1.32	4.4	95.6	0.0	0.52	0.50	0.82	0.80	1.87	8583	1118	5	0	1	0	0	logfile
✔	8iD9	35360	2023-04-20	2023-02-12	3.0	3.00	—	2.9	0.005	0.73	0.0	0.05	13.95	0.02	2.182	9.55	0.13	2.7	97.3	0.0	-0.21	0.88	0.84	3.28	2.9	0.005	0.65	0.0	0.04	14.91	0.00	2.166	6.84	1.56	4.0	96.0	0.0	0.29	1.80	0.89	0.87	3.28	7996	1095	5	0	1	0	0	logfile
✔	8iD3	35356	2023-04-21	2023-02-12	3.1	3.38	3.17	3.3	0.005	0.87	0.0	0.05	14.38	0.01	2.199	8.84	0.76	3.9	96.1	0.0	-1.42	0.65	0.79	3.03	3.3	0.003	0.56	0.0	0.04	14.82	0.00	2.208	6.41	0.33	3.2	96.8	0.0	0.26	0.41	0.65	0.80	2.55	8742	1141	5	0	1	0	0	logfile
✔	8iD4	35357	2023-04-20	2023-02-12	3.1	3.26	3.09	3.2	0.004	0.73	1.0	0.05	12.92	0.01	2.217	8.68	0.22	3.7	96.1	0.2	-1.06	0.65	0.79	3.25	3.2	0.002	0.54	0.0	0.04	14.62	0.00	2.216	6.35	0.11	3.2	96.8	0.0	0.27	0.35	0.67	0.82	2.83	8665	1134	6	0	1	1	0	logfile
✔	8G46	29714	2023-04-20	2023-02-08	2.2	2.34	2.28	2.4	0.009	0.98	0.0	0.06	15.92	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.003	0.65	0.0	0.04	16.36	0.00	2.128	5.78	1.27	2.7	97.3	0.0	0.07	0.27	0.62	0.83	4.26	8603	1064	7	0	2	110	0	logfile
✔	8CEo	16611	2023-04-21	2023-02-02	3.6	3.26	3.48	2.9	0.004	0.75	1.0	0.05	16.34	0.01	2.091	6.70	0.00	2.9	97.1	0.0	-0.68	0.73	0.56	1.54	2.9	0.004	0.65	0.0	0.04	17.74	0.00	1.928	14.28	0.16	3.1	96.9	0.0	0.59	0.66	0.68	0.52	1.48	113584	13074	66	418	19	0	0	logfile
✔	8G0C	29653	2023-04-25	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.80	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.006	0.79	0.0	0.07	5.95	0.00	1.778	2.08	0.00	9.1	90.9	0.0	0.66	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8G0B	29652	2023-04-20	2023-01-31	2.8	2.96	2.80	3.0	0.007	1.12	0.0	0.04	14.68	0.00	2.221	7.63	0.14	2.9	97.1	0.0	0.73	0.67	0.83	2.51	3.0	0.003	0.63	0.0	0.04	15.63	0.01	2.111	11.64	1.29	2.4	97.6	0.0	1.21	0.39	0.66	0.85	1.86	7758	1044	19	0	7	0	0	logfile
✔	8G0D	29654	2023-04-25	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	6.79	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.004	0.76	0.0	0.08	6.41	0.00	1.793	2.47	0.00	7.3	92.7	0.0	0.44	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	8G09	29650	2023-04-25	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.71	0.0	0.23	5.31	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.009	1.01	0.0	0.07	6.67	0.01	1.686	8.59	0.00	13.5	86.5	0.0	-1.37	0.75	0.82	0.82	—	19599	4860	26	0	10	0	0	logfile

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