Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GH4	51346	2025-04-27	2024-08-15	3.8	2.34	3.66	3.5	0.002	0.60	0.0	0.04	16.59	0.00	2.220	7.84	1.06	2.4	97.6	0.0	-2.02	0.69	0.70	1.25	2.2	0.005	0.74	0.0	0.05	17.68	0.00	2.482	14.92	5.47	7.8	92.2	0.0	-3.54	1.08	0.75	0.74	2.29	5454	750	3	0	0	0	0	logfile
✔	9D66	46586	2025-04-30	2024-08-14	2.98	3.18	2.93	3.2	0.004	0.68	0.0	0.04	13.81	0.00	2.055	3.35	0.00	1.8	98.2	0.0	-1.67	0.58	0.79	3.71	3.2	0.003	0.55	0.0	0.04	15.39	0.00	2.190	7.00	2.66	1.2	98.8	0.0	1.76	0.53	0.63	0.82	2.37	9306	1221	10	0	12	12	0	logfile
✔	9D68	46589	2025-04-26	2024-08-14	2.58	2.77	2.59	2.8	0.003	0.55	0.0	0.04	16.08	0.00	2.112	3.30	0.28	1.0	99.0	0.0	1.51	0.51	0.87	3.43	2.8	0.003	0.52	0.0	0.04	16.78	0.00	2.143	6.90	2.26	0.7	99.3	0.0	2.14	0.31	0.49	0.86	2.94	3242	426	3	0	2	6	0	logfile
✔	9D67	46588	2025-04-30	2024-08-14	2.87	3.10	1.44	3.2	0.003	0.60	0.0	0.04	16.10	0.01	2.143	4.81	0.00	2.1	97.9	0.0	0.93	0.52	0.74	2.24	3.2	0.003	0.57	0.0	0.04	16.30	0.00	2.166	8.46	2.08	1.6	98.4	0.0	1.68	1.18	0.64	0.81	2.68	9297	1218	9	0	15	3	0	logfile
✔	9D6A	46591	2025-04-26	2024-08-14	2.6	2.76	2.61	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.50	0.0	0.04	16.59	0.00	2.182	6.27	1.18	1.5	98.5	0.0	2.16	0.35	0.50	0.86	3.05	3105	407	3	0	4	9	0	logfile
✔	9D61	46585	2025-04-28	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.004	0.76	0.0	0.04	16.22	0.00	2.482	12.91	3.03	6.3	93.7	0.0	-0.47	0.90	0.69	0.66	1.38	6895	903	5	0	1	0	0	logfile
✔	9D69	46590	2025-04-26	2024-08-14	2.99	3.21	3.06	3.2	0.003	0.55	0.0	0.04	15.99	0.01	2.096	3.87	0.00	1.7	98.3	0.0	0.78	0.46	0.84	3.65	3.2	0.003	0.59	0.0	0.04	16.66	0.00	2.243	7.43	2.33	2.2	97.8	0.0	2.13	0.94	0.42	0.82	2.51	3143	413	3	0	4	0	0	logfile
✔	9GG6	51325	2025-04-26	2024-08-13	3.36	3.18	3.06	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.003	0.58	0.0	0.05	17.62	0.00	2.579	5.03	6.43	6.0	94.0	0.0	-2.11	0.54	0.39	0.89	4.16	2142	288	3	0	0	0	0	logfile
✔	9J5W	61155	2025-04-27	2024-08-13	3.2	3.54	3.38	3.6	0.008	0.62	0.0	0.04	13.10	0.00	2.114	6.69	0.00	1.2	98.6	0.2	1.27	0.54	0.76	1.61	3.6	0.002	0.60	0.0	0.04	14.83	0.00	2.392	4.42	1.21	1.2	98.6	0.2	1.71	0.40	0.51	0.77	1.77	3933	515	2	0	1	0	0	logfile
✔	9GG1	51320	2025-04-26	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.66	0.0	0.05	16.03	0.00	2.568	2.87	1.08	3.8	95.2	1.0	-2.35	0.90	0.46	0.92	7.14	3232	428	4	0	0	0	0	logfile
✔	9GG0	51319	2025-04-26	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.57	0.0	0.05	15.98	0.00	2.578	2.04	1.47	1.9	98.1	0.0	-2.14	0.32	0.39	0.88	5.55	2385	321	3	0	0	0	0	logfile
✔	9J52	61140	2025-04-27	2024-08-11	3.1	3.36	3.18	3.4	0.004	0.55	0.0	0.04	12.86	0.00	2.100	10.21	2.36	6.5	93.4	0.1	0.50	0.54	0.77	2.63	3.4	0.004	0.63	0.0	0.04	15.09	0.00	2.513	10.66	1.92	5.4	94.6	0.0	1.35	1.14	0.54	0.77	2.14	6593	764	4	0	5	0	0	logfile
✔	9J51	61139	2025-04-27	2024-08-11	3.1	3.34	3.14	3.4	0.003	0.55	0.0	0.04	14.55	0.00	2.092	9.85	2.66	5.2	94.8	0.0	0.40	0.53	0.75	2.04	3.4	0.003	0.62	0.0	0.04	16.04	0.00	2.430	9.93	3.10	5.3	94.7	0.0	0.66	1.13	0.53	0.76	2.02	6581	762	4	0	5	0	0	logfile
✔	9J4X	61138	2025-04-27	2024-08-10	2.9	3.08	2.90	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.003	0.54	0.0	0.04	15.52	0.00	2.591	6.99	1.77	4.4	95.6	0.0	1.59	0.32	0.61	0.83	2.31	6588	764	4	0	4	0	0	logfile
✔	9D32	46512	2025-04-27	2024-08-09	3.1	3.43	3.09	3.5	0.004	0.60	0.0	0.04	11.07	0.00	2.012	4.59	3.02	2.1	97.9	0.0	0.80	0.67	0.80	4.48	3.5	0.002	0.51	0.0	0.04	13.69	0.00	2.141	3.91	2.31	1.7	98.3	0.0	1.48	0.36	0.66	0.80	3.37	6130	778	5	0	11	0	0	logfile
✔	9J3X	61127	2025-04-29	2024-08-08	3.3	3.57	3.36	3.7	0.007	1.12	2.0	0.06	20.91	0.01	2.249	5.47	1.67	2.4	97.4	0.2	-1.58	0.56	0.73	1.78	3.7	0.003	0.72	0.0	0.04	17.66	0.00	2.334	9.20	2.86	2.6	97.2	0.2	2.50	0.85	0.58	0.76	1.63	8894	1156	4	0	10	0	0	logfile
✔	9J3M	61119	2025-04-27	2024-08-08	2.77	3.11	2.78	3.0	0.005	0.76	0.0	0.04	12.77	0.01	2.196	11.06	0.00	3.5	96.5	0.0	-2.56	0.51	0.80	3.68	3.0	0.004	0.69	0.0	0.05	15.13	0.00	2.449	8.00	2.19	2.2	97.8	0.0	1.24	0.38	0.53	0.81	3.51	4700	599	3	0	2	0	0	logfile
✔	9J3N	61120	2025-04-27	2024-08-08	2.72	3.39	2.86	3.2	0.005	0.78	0.0	0.04	13.39	0.00	2.252	7.60	0.20	7.3	92.6	0.2	-2.76	0.43	0.75	3.42	3.2	0.004	0.68	0.0	0.04	15.25	0.00	2.582	7.81	3.16	5.0	95.0	0.0	0.87	0.37	0.35	0.69	3.22	4809	609	3	0	1	0	0	logfile
✔	9J40	61129	2025-04-30	2024-08-08	3.4	3.62	3.40	3.7	0.009	1.37	1.0	0.06	19.90	0.01	2.278	4.65	0.68	7.6	92.2	0.2	1.49	0.60	0.76	1.80	3.7	0.005	0.76	0.0	0.04	17.98	0.01	2.566	7.76	3.49	3.8	95.9	0.4	1.85	1.20	0.63	0.78	1.16	9050	1152	4	0	12	0	0	logfile
✔	9J3L	61118	2025-04-27	2024-08-08	2.72	3.06	2.76	2.9	0.004	0.79	0.0	0.04	13.03	0.01	2.234	10.05	0.40	5.2	94.8	0.0	-1.92	0.57	0.83	4.28	3.0	0.003	0.63	0.0	0.04	15.11	0.00	2.564	7.64	1.78	4.0	96.0	0.0	0.74	0.37	0.57	0.83	4.28	4730	602	3	0	1	0	0	logfile

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