Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CY1	46004	2025-04-27	2024-08-01	3.15	3.48	3.25	3.4	0.005	0.91	0.0	0.05	13.40	0.01	2.269	3.69	0.00	2.7	97.3	0.0	-0.80	0.61	0.78	2.30	3.4	0.004	0.57	0.0	0.04	15.43	0.00	2.451	6.59	3.12	3.6	96.4	0.0	1.30	0.52	0.61	0.82	2.96	5026	649	2	0	0	0	0	logfile
✔	9CY3	46005	2025-04-27	2024-08-01	3.2	3.35	3.19	3.3	0.005	0.96	0.0	0.06	14.28	0.01	2.331	3.67	0.00	3.1	96.9	0.0	-1.30	0.59	0.70	1.72	3.3	0.003	0.61	0.0	0.04	15.72	0.00	2.493	7.63	3.32	3.5	96.5	0.0	1.08	1.24	0.62	0.75	1.50	5078	653	3	0	1	0	0	logfile
✔	9CXF	45988	2025-04-27	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.799	6.03	0.00	0.0	0.0	0.0	—	0.37	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	9CX9	45982	2025-04-27	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.003	0.64	0.0	0.04	16.33	0.00	2.496	5.83	6.50	3.4	96.6	0.0	-0.72	0.48	0.80	0.80	2.17	4631	609	5	0	0	0	0	logfile
✔	9iYX	61003	2025-04-26	2024-07-31	3.6	3.14	2.42	3.2	0.005	0.79	1.0	0.04	12.81	0.01	2.132	11.46	0.40	2.7	97.3	0.0	1.26	0.44	0.67	2.43	3.2	0.004	0.68	0.0	0.04	14.63	0.01	2.589	5.93	3.16	2.4	97.6	0.0	3.12	1.64	0.45	0.69	2.22	2626	351	4	0	2	0	0	logfile
✔	9CX3	45977	2025-04-27	2024-07-30	3.47	3.60	3.42	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.70	0.0	0.04	16.80	0.00	2.501	12.48	5.58	5.4	94.6	0.0	-1.74	0.54	0.74	0.71	1.79	5626	720	6	0	0	0	0	logfile
✔	9iXX	60980	2025-04-29	2024-07-29	3.15	3.09	2.95	3.2	0.008	0.65	0.0	0.04	9.06	0.00	1.977	7.09	0.30	1.6	98.4	0.0	-1.89	0.41	0.57	1.04	3.2	0.003	0.60	0.0	0.04	13.94	0.00	2.444	6.37	2.54	3.4	96.6	0.0	0.24	0.96	0.58	0.80	2.47	9036	1141	6	0	1	0	0	logfile
✔	9CTF	45904	2025-04-30	2024-07-25	3.9	3.87	3.93	4.0	0.002	0.49	0.0	0.04	15.18	0.00	2.210	9.47	0.52	2.5	97.4	0.1	1.77	0.61	0.75	0.89	4.0	0.003	0.62	0.0	0.04	14.92	0.00	2.422	10.04	2.40	3.3	96.7	0.0	1.61	0.60	0.64	0.77	1.21	9398	1158	2	0	24	0	0	logfile
✔	9G9W	51159	2025-04-27	2024-07-25	2.48	3.01	2.48	3.0	0.007	0.72	0.0	0.05	11.38	0.01	2.295	1.11	0.00	0.4	99.6	0.0	0.55	0.47	0.78	5.21	3.0	0.005	0.53	0.0	0.04	13.57	0.00	2.650	2.72	0.00	1.2	98.8	0.0	4.49	0.89	0.49	0.80	3.15	4089	516	4	0	9	0	0	logfile
✔	9G9V	51158	2025-04-27	2024-07-25	3.32	3.86	3.31	3.7	0.007	0.75	0.0	0.05	11.17	0.00	2.245	1.73	0.53	1.5	98.5	0.0	-0.06	0.48	0.77	4.24	3.7	0.003	0.59	0.0	0.04	12.85	0.00	2.601	2.35	1.58	1.0	99.0	0.0	4.08	1.01	0.50	0.78	3.08	4073	522	4	0	9	0	0	logfile
✔	9iW3	60944	2025-04-28	2024-07-25	3.58	4.09	3.62	3.8	0.005	0.91	2.0	0.06	23.44	0.00	1.930	22.54	2.34	6.8	92.8	0.4	-0.43	0.83	0.77	2.86	3.9	0.003	0.65	0.0	0.04	23.29	0.00	1.957	9.51	1.09	5.9	93.7	0.4	0.46	1.13	0.84	0.83	2.78	6879	712	5	51	1	0	0	logfile
✔	9CTG	45906	2025-04-30	2024-07-25	3.4	3.21	3.42	3.5	0.004	0.60	0.0	0.04	16.15	0.00	1.927	7.52	0.11	3.0	97.0	0.0	0.52	0.62	0.80	1.92	3.5	0.005	0.90	0.0	0.04	17.32	0.00	1.627	7.68	2.54	3.6	96.4	0.0	0.87	0.49	0.64	0.82	2.00	9128	1157	2	0	13	0	0	logfile
✔	9G9X	51160	2025-04-27	2024-07-25	3.13	3.60	3.08	3.5	0.007	0.75	0.0	0.05	11.30	0.01	2.404	1.01	0.00	0.8	99.2	0.0	-1.06	0.49	0.78	4.25	3.5	0.003	0.51	0.0	0.04	13.14	0.00	2.598	1.77	1.03	2.9	97.1	0.0	4.28	0.94	0.46	0.75	2.58	3955	488	4	0	7	0	0	logfile
✔	9CT3	45897	2025-04-30	2024-07-24	3.09	3.28	3.11	3.3	0.006	0.76	0.0	0.04	14.49	0.00	2.209	7.81	0.00	1.7	98.3	0.0	2.20	0.57	0.83	3.35	3.3	0.003	0.52	0.0	0.04	16.02	0.00	2.618	6.92	1.13	2.0	98.0	0.0	2.30	0.77	0.57	0.84	2.93	10138	1266	8	0	6	0	0	logfile
✔	9iVD	60925	2025-04-29	2024-07-23	3.55	4.42	3.48	4.1	0.004	0.72	0.0	0.05	16.74	0.01	2.128	8.14	0.23	11.1	88.4	0.4	-3.72	0.88	0.85	2.89	4.1	0.004	0.67	0.0	0.05	17.06	0.00	2.496	5.78	3.01	12.7	86.9	0.4	-2.89	0.91	0.88	0.85	2.93	8628	1160	3	0	0	0	0	logfile
✔	9iVK	60929	2025-04-27	2024-07-23	2.74	3.03	2.77	3.0	0.006	0.87	0.0	0.06	14.94	0.00	2.231	9.92	0.69	2.0	98.0	0.0	1.92	0.59	0.74	2.64	3.0	0.003	0.56	0.0	0.04	17.19	0.00	2.471	6.38	1.61	1.8	98.2	0.0	2.84	1.25	0.61	0.79	2.35	4077	507	4	0	1	0	0	logfile
✔	9iVG	60927	2025-04-30	2024-07-23	3.0	3.73	3.06	3.5	0.003	0.56	0.0	0.04	18.21	0.00	2.127	7.87	3.98	5.1	94.7	0.2	0.58	0.75	0.87	2.24	3.5	0.003	0.71	0.0	0.04	18.00	0.00	2.431	7.17	2.49	5.3	94.5	0.2	0.83	0.69	0.67	0.80	2.44	9325	1170	6	0	0	0	0	logfile
✔	9iV1	60917	2025-04-28	2024-07-22	2.98	2.31	3.06	2.1	0.007	0.89	1.0	0.05	16.44	0.00	2.181	13.35	4.62	7.5	91.7	0.8	-1.29	0.79	0.80	2.60	2.1	0.004	0.72	0.0	0.04	16.35	0.00	2.484	8.59	4.38	7.9	92.0	0.1	-0.78	0.37	0.79	0.80	2.36	8284	1109	6	0	1	0	0	logfile
✔	9iUU	60914	2025-04-27	2024-07-22	3.29	3.45	3.35	3.5	0.006	0.86	1.0	0.05	16.62	0.01	2.254	9.61	0.86	4.6	95.4	0.0	-0.39	0.67	0.85	2.48	3.5	0.003	0.58	0.0	0.04	16.44	0.00	2.471	6.85	3.31	3.4	96.6	0.0	0.32	1.19	0.64	0.84	2.17	6513	791	4	0	8	0	0	logfile
✔	9iUP	60911	2025-04-27	2024-07-22	3.3	3.49	3.27	3.5	0.005	0.74	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.003	0.56	0.0	0.04	17.28	0.00	2.477	6.46	2.75	3.1	96.9	0.0	0.62	0.24	0.67	0.85	2.01	6420	787	3	0	2	0	0	logfile

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