Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZYV	60580	2025-04-29	2024-06-18	3.12	2.96	3.01	3.2	0.003	0.49	0.0	0.03	17.75	0.00	2.173	7.29	0.43	1.6	98.4	0.0	3.33	0.60	0.82	1.10	3.2	0.004	0.52	0.0	0.04	17.90	0.00	2.413	7.73	2.77	2.2	97.8	0.0	3.63	0.25	0.57	0.81	0.94	8913	1174	10	0	2	5	0	logfile
✔	9FR4	50708	2025-04-27	2024-06-18	3.1	3.44	3.07	3.5	0.004	0.68	0.0	0.04	13.90	0.00	2.125	5.93	0.00	5.9	94.1	0.0	-3.57	0.60	0.80	2.99	3.5	0.003	0.54	0.0	0.04	16.24	0.00	2.430	3.71	3.67	5.4	94.6	0.0	-1.62	0.38	0.56	0.79	2.83	4874	614	4	0	0	0	0	logfile
✔	8ZZ0	60585	2025-04-29	2024-06-18	3.43	3.30	3.36	3.5	0.003	0.58	0.0	0.04	17.58	0.01	2.123	9.76	0.00	1.9	98.1	0.0	2.96	0.67	0.80	0.46	3.5	0.003	0.54	0.0	0.04	17.85	0.00	2.506	7.28	1.17	1.6	98.4	0.0	3.88	1.40	0.66	0.78	0.51	8914	1174	10	0	0	3	0	logfile
✔	8ZYN	60573	2025-04-27	2024-06-18	3.27	3.51	3.25	3.4	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.56	0.0	0.04	15.67	0.00	2.627	5.34	3.46	2.8	97.2	0.0	1.22	0.35	0.58	0.83	1.14	6640	840	4	0	0	0	0	logfile
✔	8ZYW	60581	2025-04-29	2024-06-18	3.43	3.41	3.36	3.6	0.003	0.55	0.0	0.04	17.93	0.00	2.109	8.67	0.32	1.7	98.3	0.0	3.05	0.60	0.78	0.40	3.6	0.003	0.49	0.0	0.04	18.36	0.00	2.502	6.57	2.77	1.7	98.3	0.0	3.90	0.27	0.56	0.79	0.54	8910	1174	10	0	0	4	0	logfile
✔	9CAX	45406	2025-04-26	2024-06-18	3.37	3.55	3.26	3.5	0.005	0.92	0.0	0.05	16.47	0.01	2.234	5.04	0.00	4.5	95.3	0.2	-2.36	0.61	0.83	2.06	3.5	0.003	0.68	0.0	0.04	17.26	0.00	2.499	8.31	2.58	4.1	95.7	0.2	1.96	0.51	0.62	0.85	2.17	3611	470	1	0	0	0	0	logfile
✔	9CBB	45421	2025-04-28	2024-06-18	4.15	4.29	4.00	4.2	0.007	0.92	0.0	0.04	14.26	0.01	2.221	3.12	0.00	6.2	93.8	0.0	-2.08	0.49	0.73	—	4.2	0.003	0.63	0.0	0.04	14.04	0.00	2.379	7.88	0.00	7.3	92.7	0.0	-0.08	0.96	0.49	0.74	—	7356	470	2	0	1	0	3733	logfile
✔	9CAJ	45393	2025-04-27	2024-06-17	3.51	2.46	3.38	2.2	0.004	0.66	0.0	0.04	15.92	0.01	2.088	12.57	0.45	4.8	95.2	0.0	-0.25	0.77	0.76	2.72	2.2	0.004	0.66	0.0	0.04	17.50	0.00	2.075	7.98	2.69	5.2	94.7	0.1	-0.28	0.40	0.77	0.77	2.25	6245	773	4	9	1	0	0	logfile
✔	9CAL	45395	2025-04-27	2024-06-17	3.15	2.36	3.09	2.1	0.004	0.68	0.0	0.04	15.36	0.01	2.136	5.47	0.00	3.9	96.1	0.0	-0.07	0.77	0.80	2.39	2.1	0.003	0.55	0.0	0.04	17.55	0.00	2.243	5.63	1.80	4.2	95.8	0.0	0.64	0.31	0.80	0.83	2.27	6268	773	5	10	1	0	0	logfile
✔	9CAG	45390	2025-04-27	2024-06-17	3.33	2.37	3.31	2.2	0.004	0.63	0.0	0.05	15.05	0.00	2.063	9.61	0.15	4.7	95.2	0.1	0.57	0.77	0.79	3.15	2.2	0.002	0.53	0.0	0.04	17.55	0.00	2.083	6.38	1.80	3.8	96.1	0.1	0.65	0.36	0.79	0.82	2.68	6231	773	4	8	2	0	0	logfile
✔	9CAH	45391	2025-04-28	2024-06-17	3.16	2.35	3.20	2.1	0.004	0.62	0.0	0.04	14.90	0.00	2.049	8.60	0.13	7.2	92.6	0.2	-0.12	0.76	0.78	2.31	2.1	0.004	0.65	0.0	0.04	16.98	0.00	2.109	7.47	2.67	7.2	92.8	0.0	-0.05	0.36	0.79	0.82	2.63	7116	907	3	0	4	0	0	logfile
✔	9CAK	45394	2025-04-27	2024-06-17	3.01	2.30	3.04	2.1	0.005	0.62	0.0	0.04	15.87	0.03	2.010	7.48	0.00	4.8	95.2	0.0	-0.27	0.79	0.80	3.23	2.0	0.004	0.58	0.0	0.04	17.63	0.00	2.155	6.19	2.25	4.8	95.2	0.0	0.45	0.91	0.80	0.82	2.76	6268	773	5	10	2	0	0	logfile
✔	9CA0	45378	2025-04-27	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.003	0.55	0.0	0.04	17.27	0.00	2.493	6.27	3.00	3.9	96.1	0.0	-0.44	0.35	0.79	0.81	1.61	6265	773	5	10	1	0	0	logfile
✔	8ZYA	60560	2025-04-28	2024-06-16	2.5	3.15	2.97	3.1	0.004	0.75	0.0	0.05	14.03	0.01	2.290	4.34	0.13	4.5	95.4	0.1	-1.47	0.58	0.75	3.06	3.1	0.002	0.57	0.0	0.04	16.04	0.00	2.408	5.46	1.77	3.8	96.2	0.0	0.05	1.15	0.53	0.72	2.24	7306	884	6	0	8	0	0	logfile
✔	9CA1	45379	2025-04-27	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.60	0.00	2.094	5.79	3.15	4.0	96.0	0.0	0.22	0.31	0.79	0.82	1.62	6265	773	5	10	2	0	0	logfile
✔	9CA4	45380	2025-04-27	2024-06-16	3.01	2.50	3.43	2.2	0.005	0.87	1.0	0.04	14.82	0.01	2.091	6.79	0.00	5.2	94.6	0.1	-0.38	0.76	0.79	2.74	2.2	0.004	0.62	0.0	0.04	17.20	0.00	2.180	5.90	2.55	5.0	95.0	0.0	0.21	0.93	0.78	0.81	1.99	6230	773	5	8	2	0	0	logfile
✔	9C9U	45371	2025-04-27	2024-06-15	4.5	4.04	3.57	3.8	0.011	1.48	0.0	0.07	15.52	0.01	2.048	19.72	0.00	10.7	89.3	0.0	-3.13	0.72	0.61	—	3.8	0.003	1.23	0.0	0.09	16.30	0.01	2.288	19.21	0.00	11.3	88.7	0.0	-3.25	1.85	0.78	0.76	—	3018	444	18	0	0	0	0	logfile
✔	8ZXM	60544	2025-04-26	2024-06-14	3.39	3.80	3.41	3.8	0.009	1.32	0.0	0.08	13.58	0.01	2.540	0.40	1.80	3.0	97.0	0.0	-3.84	0.45	0.72	2.72	3.8	0.003	0.61	0.0	0.04	14.83	0.00	2.601	2.82	2.58	2.8	97.2	0.0	1.38	0.53	0.49	0.73	0.99	3665	471	3	0	3	0	0	logfile
✔	8ZXN	60545	2025-04-26	2024-06-14	3.06	3.28	2.99	3.3	0.009	1.27	0.0	0.08	12.40	0.01	2.516	0.13	0.77	1.5	98.5	0.0	-3.05	0.49	0.77	3.38	3.3	0.003	0.61	0.0	0.04	14.79	0.00	2.518	2.29	2.06	2.6	97.4	0.0	2.27	0.48	0.54	0.79	2.51	3653	471	2	0	2	0	0	logfile
✔	8ZX6	60539	2025-04-26	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.006	0.79	0.0	0.05	14.26	0.00	2.631	6.51	1.52	10.6	89.4	0.0	-3.65	0.72	0.35	0.84	5.17	3468	456	6	0	0	0	0	logfile

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