Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K18	36788	2025-04-27	2023-07-10	3.68	5.01	5.10	3.7	0.014	1.86	0.0	0.09	13.98	0.03	1.995	12.12	0.85	7.1	92.9	0.0	-1.91	0.53	0.34	1.41	3.6	0.004	0.79	0.0	0.04	14.99	0.00	2.369	24.23	2.54	5.7	94.3	0.0	-1.20	2.88	0.74	0.79	0.57	3246	414	3	0	0	0	0	logfile
✔	8K0Z	36781	2025-04-29	2023-07-10	3.7	3.89	3.60	3.9	0.010	1.06	0.0	0.06	9.69	0.01	2.364	1.80	0.00	7.8	92.0	0.2	-6.16	0.68	0.83	2.81	3.9	0.003	0.73	0.0	0.04	14.54	0.00	2.550	3.83	1.30	5.6	94.4	0.0	-0.55	1.39	0.67	0.84	1.96	8484	1092	2	0	0	0	0	logfile
✔	8K0X	36780	2025-04-29	2023-07-10	3.2	3.37	3.14	3.4	0.008	1.04	0.0	0.06	9.78	0.01	2.307	1.16	0.00	7.9	92.1	0.0	-6.65	0.67	0.84	4.34	3.4	0.002	0.59	0.0	0.04	14.03	0.00	2.595	3.79	2.72	5.4	94.6	0.0	-1.45	1.27	0.65	0.85	2.66	8447	1084	3	0	1	0	0	logfile
✔	8K15	36786	2025-04-30	2023-07-10	2.58	2.79	2.59	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.92	0.0	0.05	24.71	0.01	1.744	4.48	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8PQ2	17819	2025-04-27	2023-07-10	3.85	4.01	3.64	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.60	0.0	0.04	13.37	0.00	2.278	6.03	3.03	10.7	89.1	0.3	-2.31	0.57	0.60	0.80	3.04	5956	390	4	0	1	0	2891	logfile
✔	8K1B	36791	2025-04-27	2023-07-10	3.47	3.90	3.45	3.8	0.005	0.72	0.0	0.05	16.50	0.01	2.357	10.66	0.85	2.8	97.2	0.0	-1.31	0.65	0.71	2.02	3.9	0.007	0.83	0.0	0.05	17.14	0.00	2.481	14.05	5.13	4.6	95.4	0.0	-0.85	2.44	0.61	0.73	1.58	4176	508	4	0	6	0	0	logfile
✔	8K0M	36774	2025-04-30	2023-07-09	3.17	3.37	3.20	3.4	0.003	0.58	0.0	0.04	17.60	0.00	1.975	4.27	0.39	4.0	95.8	0.2	0.17	0.67	0.81	2.08	3.4	0.002	0.54	0.0	0.04	17.80	0.00	2.027	4.11	2.96	4.5	95.4	0.1	0.99	0.27	0.65	0.79	1.43	9641	1186	5	0	6	0	0	logfile
✔	8K0E	36762	2025-04-29	2023-07-08	3.65	4.35	3.82	4.2	0.004	0.74	0.0	0.04	21.03	0.01	2.098	8.36	0.12	4.2	95.8	0.0	1.22	0.75	0.79	1.50	4.3	0.003	0.69	0.0	0.04	18.88	0.00	2.406	5.53	1.96	2.9	97.1	0.0	2.02	1.16	0.76	0.78	1.48	8300	1008	7	0	9	0	0	logfile
✔	8K0F	36763	2025-04-30	2023-07-08	3.37	3.03	3.28	3.4	0.004	0.63	0.0	0.04	18.66	0.00	2.114	4.87	0.00	3.8	96.2	0.1	0.29	0.69	0.80	2.26	3.4	0.003	0.54	0.0	0.04	17.76	0.00	2.139	4.02	2.18	3.8	96.2	0.0	1.32	1.14	0.69	0.79	2.06	9595	1182	5	0	5	0	0	logfile
✔	8K0B	36759	2025-04-27	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	2.0	0.004	0.81	0.0	0.05	17.76	0.00	2.418	14.26	6.23	8.3	91.7	0.0	-0.68	0.45	0.54	0.54	1.10	5689	689	1	0	0	0	0	logfile
✔	8PPo	17806	2025-04-26	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.86	0.00	2.638	0.58	1.04	0.0	100.0	0.0	1.20	0.37	0.50	0.88	5.61	1696	240	16	0	0	0	0	logfile
✔	8TEG	41185	2025-04-27	2023-07-06	2.15	2.08	2.12	2.1	0.007	0.74	0.0	0.04	15.68	0.00	2.185	1.68	1.05	1.4	98.6	0.0	1.81	0.63	0.88	4.56	2.2	0.003	0.61	0.0	0.04	16.07	0.00	2.606	1.79	0.42	1.4	98.6	0.0	1.97	1.20	0.63	0.89	5.03	4518	561	4	0	0	88	0	logfile
✔	8TEN	41192	2025-04-28	2023-07-06	2.98	2.30	2.85	2.8	0.003	0.54	0.0	0.04	17.49	0.00	2.079	3.70	1.07	3.1	96.9	0.0	2.34	0.55	0.82	1.76	2.8	0.002	0.56	0.0	0.04	18.11	0.00	2.565	4.58	1.78	2.5	97.5	0.0	2.63	0.40	0.56	0.82	1.36	7872	996	2	0	0	0	0	logfile
✔	8TEL	41190	2025-04-28	2023-07-06	2.77	2.48	2.67	2.8	0.004	0.55	0.0	0.04	17.77	0.00	2.075	3.10	1.20	4.2	95.8	0.0	2.33	0.63	0.86	2.14	2.7	0.002	0.49	0.0	0.04	17.96	0.00	2.520	4.43	3.23	3.3	96.7	0.0	2.65	0.89	0.63	0.87	2.35	7806	988	2	0	0	0	0	logfile
✔	8TEi	41187	2025-04-30	2023-07-06	2.58	2.31	2.45	2.6	0.025	0.69	0.0	0.04	21.72	0.01	2.028	3.45	0.00	1.6	98.4	0.0	2.53	0.66	0.84	3.91	2.6	0.003	0.56	0.0	0.04	19.32	0.00	2.445	5.02	1.60	1.8	98.2	0.0	1.96	0.92	0.66	0.88	3.50	9816	1108	6	0	24	214	0	logfile
✔	8TEJ	41188	2025-04-27	2023-07-06	2.55	2.41	2.48	2.5	0.004	0.57	0.0	0.04	17.73	0.00	1.984	2.78	2.87	4.7	95.3	0.0	2.14	0.58	0.85	2.31	2.5	0.003	0.52	0.0	0.04	17.75	0.00	2.481	4.30	1.44	4.3	95.7	0.0	2.24	0.24	0.57	0.85	2.34	3925	494	2	0	0	22	0	logfile
✔	8JZP	36750	2025-04-29	2023-07-06	3.45	3.73	3.50	3.8	0.004	0.75	1.0	0.04	14.16	0.01	2.180	7.53	0.73	6.2	93.8	0.0	-0.64	0.67	0.76	2.41	3.8	0.005	0.75	0.0	0.04	15.43	0.01	2.471	9.64	4.51	6.0	94.0	0.0	-0.50	0.99	0.66	0.76	2.38	8622	1199	6	0	0	0	0	logfile
✔	8TER	41198	2025-04-27	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.003	0.55	0.0	0.04	19.98	0.00	2.678	2.29	5.00	3.0	97.0	0.0	-3.88	0.85	0.66	0.90	6.57	5780	700	40	0	0	240	0	logfile
✔	8JZZ	36755	2025-04-29	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.002	0.58	0.0	0.04	15.10	0.00	2.533	7.17	2.16	4.0	96.0	0.0	-0.19	0.97	0.59	0.70	2.00	8680	1198	6	0	0	0	0	logfile
✔	8TEo	41193	2025-04-28	2023-07-06	2.39	2.54	2.26	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.003	0.52	0.0	0.04	14.20	0.00	2.609	4.18	1.66	1.1	98.9	0.0	3.69	0.32	0.65	0.89	5.10	6507	784	12	0	34	9	0	logfile

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