Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TEo	41193	2025-04-28	2023-07-06	2.39	2.54	2.26	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.003	0.52	0.0	0.04	14.20	0.00	2.609	4.18	1.66	1.1	98.9	0.0	3.69	0.32	0.65	0.89	5.10	6507	784	12	0	34	9	0	logfile
✔	8JZU	36753	2025-04-26	2023-07-06	3.05	3.36	3.10	3.4	0.004	0.63	0.0	0.04	13.67	0.00	2.206	6.34	0.00	2.1	97.9	0.0	1.94	0.54	0.74	2.37	3.4	0.003	0.60	0.0	0.04	15.77	0.00	2.560	8.46	3.35	2.5	97.5	0.0	1.51	1.65	0.58	0.81	2.81	3741	488	3	0	1	0	0	logfile
✔	8JZZ	36755	2025-04-29	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.002	0.58	0.0	0.04	15.10	0.00	2.533	7.17	2.16	4.0	96.0	0.0	-0.19	0.97	0.59	0.70	2.00	8680	1198	6	0	0	0	0	logfile
✔	8JZR	36751	2025-04-26	2023-07-06	3.25	3.52	3.27	3.5	0.007	0.81	0.0	0.05	12.74	0.01	2.381	4.82	0.00	3.8	95.7	0.4	0.75	0.64	0.79	2.96	3.5	0.003	0.61	0.0	0.04	16.13	0.00	2.597	6.67	3.12	3.8	96.2	0.0	1.94	1.07	0.59	0.85	3.14	3474	456	2	0	1	0	0	logfile
✔	8TEM	41191	2025-04-28	2023-07-06	3.02	2.66	2.92	3.0	0.003	0.56	0.0	0.04	17.16	0.00	2.092	3.52	1.87	3.6	96.4	0.0	1.84	0.59	0.82	2.19	3.0	0.003	0.58	0.0	0.04	17.07	0.00	2.489	3.65	1.76	1.9	98.1	0.0	2.60	0.50	0.61	0.84	2.02	7992	1010	2	0	0	0	0	logfile
✔	8JZS	36752	2025-04-28	2023-07-06	2.95	3.15	2.91	3.2	0.008	0.96	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.004	0.64	0.0	0.04	14.81	0.00	2.537	4.92	2.79	4.6	95.4	0.0	1.58	1.24	0.64	0.84	2.22	7500	972	4	0	6	0	0	logfile
✔	8PoK	17793	2025-04-28	2023-07-05	3.4	3.50	3.48	3.4	0.007	0.99	4.0	0.06	10.58	0.01	2.115	7.67	0.46	10.5	89.5	0.0	-2.24	0.57	0.78	2.62	3.4	0.003	0.62	0.0	0.04	14.84	0.00	2.441	3.74	3.22	7.6	92.4	0.0	-0.58	0.58	0.62	0.82	2.19	8042	1024	6	0	1	0	0	logfile
✔	8TEA	41179	2025-04-27	2023-07-05	3.4	2.31	—	2.0	0.004	0.75	0.0	0.05	13.18	0.01	2.256	5.80	0.30	4.4	95.6	0.0	-0.71	0.72	0.68	2.75	2.1	0.004	0.65	0.0	0.04	15.02	0.00	2.301	9.25	2.26	4.6	95.4	0.0	-0.36	0.39	0.72	0.69	2.61	6054	780	7	0	0	0	0	logfile
✔	8PoP	17794	2025-04-29	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	20.03	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.004	0.63	0.0	0.04	22.01	0.00	2.518	4.59	2.99	0.3	99.7	0.0	3.87	1.38	0.71	0.84	1.52	8929	953	11	56	0	0	0	logfile
✔	8TDo	41172	2025-04-26	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.003	0.51	0.0	0.05	14.97	0.00	2.457	8.01	2.22	4.8	95.2	0.0	-3.42	0.37	0.52	0.85	4.73	2892	372	4	0	0	0	0	logfile
✔	8PoC	17788	2025-04-27	2023-07-04	4.0	4.12	3.85	4.0	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	4.0	0.004	0.64	0.0	0.03	17.18	0.00	2.537	6.89	4.04	2.3	97.7	0.0	3.01	1.43	0.77	0.82	—	4924	616	4	0	0	0	0	logfile
✔	8PoG	17791	2025-04-27	2023-07-04	4.15	4.36	4.08	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.37	0.00	2.562	5.33	0.00	1.6	98.4	0.0	2.32	1.94	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✔	8JZ7	36736	2025-04-30	2023-07-04	2.6	2.26	—	1.9	0.006	0.87	0.0	0.05	13.85	0.01	2.197	15.42	0.61	7.0	93.0	0.0	-2.16	0.75	0.73	2.54	2.9	0.003	0.68	0.0	0.04	16.72	0.00	2.533	7.85	2.64	4.2	95.8	0.0	-1.09	0.48	0.76	0.75	1.98	9042	1144	6	0	1	0	0	logfile
✔	8TDN	41171	2025-04-26	2023-07-04	3.1	3.48	2.80	3.4	0.004	0.54	0.0	0.05	15.57	0.00	2.270	9.57	0.00	7.9	92.1	0.0	-2.86	0.59	0.86	5.30	3.4	0.008	0.66	0.0	0.05	15.77	0.00	2.641	7.91	3.04	8.3	91.7	0.0	-3.17	0.36	0.60	0.88	5.28	3620	465	5	0	0	0	0	logfile
✔	8JYS	36730	2025-04-26	2023-07-03	4.5	4.28	3.73	4.3	0.004	0.97	0.0	0.05	17.51	0.01	2.197	20.35	1.88	12.7	86.1	1.2	-3.49	0.67	0.71	—	4.4	0.003	0.80	0.0	0.05	13.50	0.01	2.408	11.71	0.00	15.8	83.1	1.2	-3.47	1.22	0.67	0.72	—	3522	441	4	0	0	0	0	logfile
✔	8JY8	36723	2025-04-28	2023-07-03	2.45	2.34	2.57	2.4	0.005	0.69	0.0	0.04	17.05	0.01	2.343	7.64	1.65	2.1	97.9	0.0	0.01	0.60	0.75	3.63	2.4	0.003	0.64	0.0	0.04	16.71	0.01	2.460	7.03	2.47	2.9	97.1	0.0	1.64	0.52	0.68	0.81	4.52	7392	968	8	0	4	0	0	logfile
✔	8JY7	36722	2025-04-28	2023-07-03	3.2	2.66	3.26	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.003	0.62	0.0	0.04	14.16	0.00	2.552	7.06	2.06	4.9	95.1	0.0	1.13	1.56	0.65	0.81	1.79	7292	968	4	0	0	0	0	logfile
✔	8JXX	36716	2025-04-29	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.82	0.0	0.05	13.57	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.002	0.56	0.0	0.04	14.91	0.00	2.553	3.61	1.79	3.5	96.5	0.0	1.22	0.34	0.60	0.78	1.85	8493	1103	6	0	1	0	0	logfile
✔	8JXV	36714	2025-04-28	2023-07-01	3.21	2.43	3.23	3.3	0.007	0.83	0.0	0.05	13.11	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.3	0.003	0.67	0.0	0.04	14.79	0.00	2.476	8.00	1.33	4.4	95.6	0.0	0.53	0.35	0.70	0.70	1.07	7935	1040	6	0	1	0	0	logfile
✔	8JXW	36715	2025-04-29	2023-07-01	3.01	3.30	3.13	3.4	0.006	0.82	0.0	0.05	13.11	0.01	2.092	6.36	0.80	4.2	95.8	0.0	-0.59	0.61	0.77	3.22	3.4	0.002	0.56	0.0	0.04	14.79	0.00	2.487	3.73	2.75	3.7	96.3	0.0	0.86	0.33	0.57	0.75	2.25	8389	1108	6	0	1	0	0	logfile

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