Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JVA	36672	2025-04-27	2023-06-28	2.81	3.69	2.86	3.4	0.004	0.64	0.0	0.04	12.61	0.00	2.217	5.62	0.00	4.6	95.4	0.0	-0.47	0.84	0.82	3.94	3.4	0.003	0.72	0.0	0.04	15.08	0.00	2.508	6.87	1.35	3.1	96.9	0.0	-0.08	0.93	0.84	0.84	3.31	6071	769	5	0	5	0	0	logfile
✔	8PMD	17759	2025-04-30	2023-06-28	2.95	2.88	2.91	2.9	0.004	0.66	0.0	0.04	18.21	0.00	1.353	11.85	0.21	1.8	98.2	0.0	1.07	0.62	0.80	2.46	2.9	0.004	0.66	0.0	0.04	18.47	0.00	1.980	8.87	2.47	1.8	98.2	0.0	1.35	0.46	0.61	0.80	2.48	8844	1129	2	0	4	2	0	logfile
✔	8PM2	17756	2025-04-28	2023-06-28	2.92	2.98	2.94	3.3	0.006	0.78	0.0	0.05	13.03	0.01	2.132	4.04	0.00	2.4	97.6	0.0	0.56	0.74	0.80	3.49	3.3	0.003	0.62	0.0	0.04	15.99	0.00	2.528	5.99	2.74	2.6	97.4	0.0	1.28	0.54	0.74	0.84	2.81	7821	1009	6	0	2	0	0	logfile
✔	8JV6	36669	2025-04-28	2023-06-27	3.43	3.73	3.37	3.7	0.005	0.76	0.0	0.05	15.51	0.00	2.184	7.00	0.00	2.7	97.3	0.0	0.26	0.62	0.83	2.25	3.7	0.003	0.56	0.0	0.04	15.49	0.00	2.571	4.92	3.27	3.3	96.7	0.0	0.46	0.33	0.62	0.83	2.31	7458	948	6	0	15	0	0	logfile
✔	8JV5	36668	2025-04-28	2023-06-27	3.23	3.50	3.15	3.4	0.005	0.63	0.0	0.04	12.60	0.00	2.312	5.16	0.76	2.9	97.1	0.0	0.88	0.65	0.80	2.90	3.4	0.004	0.63	0.0	0.04	14.49	0.00	2.610	5.64	3.54	2.0	98.0	0.0	0.80	0.51	0.65	0.82	3.08	7480	949	6	0	12	0	0	logfile
✔	8PLZ	17754	2025-04-27	2023-06-27	1.9	1.74	1.97	1.9	0.005	0.77	0.0	0.05	16.79	0.01	2.212	4.12	0.90	1.6	98.2	0.2	0.88	0.63	0.80	5.76	1.9	0.003	0.64	0.0	0.04	17.07	0.00	2.598	4.41	0.54	1.6	98.2	0.2	1.66	0.33	0.62	0.80	5.60	5271	630	7	0	2	164	0	logfile
✔	8PKF	17737	2025-04-27	2023-06-26	2.3673	1.91	2.31	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.003	0.61	0.0	0.05	16.56	0.00	2.649	5.80	2.35	2.8	97.2	0.0	-2.26	1.95	0.52	0.84	4.76	4308	552	6	0	0	0	0	logfile
✔	8PKG	17738	2025-04-27	2023-06-26	2.99	2.16	2.98	3.3	0.012	1.65	0.0	0.12	10.76	0.01	2.394	0.12	0.00	2.3	97.7	0.0	-3.24	0.52	0.75	2.62	3.3	0.004	0.74	0.0	0.05	16.84	0.00	2.583	9.73	2.78	3.0	97.0	0.0	-2.32	0.84	0.49	0.77	3.40	4314	552	6	0	0	0	0	logfile
✔	8PKE	17736	2025-04-27	2023-06-26	3.39	3.23	3.11	3.6	0.013	1.75	0.0	0.13	11.50	0.01	1.732	0.23	0.00	2.3	97.7	0.0	-3.31	0.48	0.78	2.89	3.6	0.004	0.66	0.0	0.05	14.42	0.00	2.440	9.73	1.07	2.1	97.9	0.0	-2.47	1.62	0.49	0.84	3.78	4314	552	6	0	0	0	0	logfile
✔	8TA6	41130	2025-04-26	2023-06-26	4.03	4.31	5.28	4.2	0.013	1.99	1.0	0.10	15.10	0.01	2.524	0.91	2.10	9.4	90.2	0.4	-2.23	0.44	0.72	—	4.2	0.003	0.76	0.0	0.04	14.05	0.00	2.542	10.44	0.00	3.8	96.2	0.0	-1.53	1.68	0.45	0.69	—	2158	274	2	0	0	0	0	logfile
✔	8PKD	17735	2025-04-27	2023-06-26	2.33	2.42	2.31	2.4	0.003	0.44	0.0	0.04	15.00	0.00	2.246	3.95	0.00	2.7	97.3	0.0	1.55	0.65	0.81	4.56	2.4	0.002	0.45	0.0	0.04	17.83	0.00	2.665	3.42	0.82	1.5	98.5	0.0	2.10	1.04	0.80	0.91	4.32	4844	600	8	0	0	16	0	logfile
✔	8PJN	17713	2025-04-28	2023-06-23	3.4	3.52	3.41	3.6	0.007	0.75	0.0	0.05	14.18	0.01	2.251	5.43	0.00	5.1	94.9	0.0	1.04	0.78	0.86	2.67	3.6	0.002	0.50	0.0	0.04	15.83	0.00	2.618	4.04	2.90	4.9	95.1	0.0	1.93	0.26	0.77	0.88	2.05	6917	923	6	0	2	0	0	logfile
✔	8JU0	36658	2025-04-26	2023-06-23	2.98	3.34	2.90	3.3	0.006	0.81	0.0	0.06	13.41	0.00	2.221	8.35	0.00	1.6	98.4	0.0	1.57	0.52	0.73	2.11	3.3	0.004	0.59	0.0	0.04	14.29	0.00	2.616	7.25	2.56	1.6	98.4	0.0	1.93	0.28	0.50	0.73	2.21	3199	431	2	0	1	0	0	logfile
✔	8PJP	17718	2025-04-26	2023-06-23	2.92	3.55	2.86	3.4	0.004	0.53	0.0	0.04	15.92	0.00	2.365	2.11	1.34	2.5	97.5	0.0	0.81	0.38	0.90	2.83	3.4	0.005	0.73	0.0	0.04	16.86	0.00	2.461	4.93	2.68	2.8	97.2	0.0	0.63	1.04	0.34	0.92	3.62	2157	286	3	0	2	0	0	logfile
✔	8JTY	36656	2025-04-27	2023-06-22	3.26	3.60	3.25	3.6	0.003	0.55	0.0	0.04	16.26	0.00	2.217	4.12	0.00	5.0	95.0	0.0	-0.56	0.57	0.78	1.67	3.6	0.002	0.56	0.0	0.04	16.51	0.00	2.374	2.24	2.05	4.3	95.7	0.0	-0.03	0.25	0.52	0.75	1.53	4274	566	2	0	0	0	0	logfile
✔	8JTX	36655	2025-04-27	2023-06-22	3.28	3.65	3.30	3.6	0.003	0.70	0.0	0.04	15.90	0.00	2.297	2.73	0.46	3.9	96.1	0.0	-1.20	0.56	0.78	1.80	3.6	0.002	0.57	0.0	0.04	16.27	0.00	2.549	2.14	2.78	3.9	96.1	0.0	-0.31	0.33	0.62	0.81	1.86	4253	566	2	0	0	0	0	logfile
✔	8JTT	36652	2025-04-26	2023-06-22	3.87	4.32	3.72	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.66	0.0	0.04	15.50	0.00	2.622	8.74	2.77	4.4	95.6	0.0	0.11	1.15	0.52	0.60	0.05	3321	454	2	0	1	0	0	logfile
✔	8JTZ	36657	2025-04-27	2023-06-22	3.27	3.79	3.40	3.7	0.006	0.90	0.0	0.06	15.42	0.01	2.239	10.05	0.25	3.2	96.8	0.0	-1.05	0.52	0.74	1.46	3.7	0.003	0.59	0.0	0.04	15.86	0.00	2.567	8.79	3.94	3.0	97.0	0.0	1.32	0.33	0.53	0.75	1.58	3999	530	2	0	1	0	0	logfile
✔	8JTV	36653	2025-04-26	2023-06-22	3.77	4.24	3.64	4.2	0.006	0.66	0.0	0.04	12.16	0.01	2.293	8.08	0.36	4.2	95.8	0.0	0.62	0.51	0.62	0.67	4.2	0.003	0.67	0.0	0.04	15.06	0.00	2.638	9.27	3.25	4.9	95.1	0.0	1.14	0.38	0.49	0.64	0.67	3067	437	2	0	1	0	0	logfile
✔	8JTW	36654	2025-04-27	2023-06-22	3.23	3.56	3.24	3.6	0.002	0.56	0.0	0.04	13.05	0.00	2.309	2.70	0.00	4.3	95.7	0.0	0.14	0.57	0.76	1.88	3.6	0.003	0.58	0.0	0.04	14.62	0.00	2.593	3.64	0.91	5.5	94.5	0.0	0.45	0.29	0.55	0.77	1.42	4282	566	2	0	0	0	0	logfile

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