Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XGo	38329	2025-05-12	2023-12-15	2.68	3.44	2.75	3.2	0.008	0.68	2.0	0.14	13.28	0.00	2.144	9.67	0.21	5.5	94.5	0.0	-0.06	0.72	0.87	3.24	3.2	0.015	0.68	0.0	0.04	16.13	0.00	2.260	7.39	1.96	5.3	94.7	0.0	0.22	1.24	0.71	0.87	2.92	9045	1155	8	0	3	0	0	logfile
✔	8XGG	38322	2025-05-29	2023-12-15	3.2	3.52	3.34	3.4	0.003	0.84	0.0	0.04	15.47	0.00	2.581	5.21	0.67	1.9	98.1	0.0	1.70	0.57	0.78	2.56	3.4	0.003	0.55	0.0	0.04	16.38	0.00	2.535	5.00	0.44	3.3	96.7	0.0	3.87	1.76	0.57	0.79	3.12	32700	1980	24	0	72	0	15972	logfile
✔	8RHH	19176	2025-05-14	2023-12-15	3.0	3.80	2.99	3.5	0.009	0.70	0.0	0.04	16.97	0.00	1.931	8.14	0.15	3.1	96.9	0.0	0.16	0.65	0.82	2.49	3.5	0.003	0.70	0.0	0.04	16.43	0.00	2.031	8.56	2.17	3.1	96.9	0.0	0.67	0.82	0.62	0.85	2.41	12261	1533	11	1	7	0	0	logfile
✔	8RGX	19162	2025-05-13	2023-12-14	3.2	3.16	3.17	3.1	0.004	0.48	0.0	0.03	11.00	0.00	2.316	4.67	0.76	1.0	99.0	0.0	2.97	0.74	0.79	0.87	3.1	0.004	0.60	0.0	0.03	16.57	0.00	2.546	7.38	3.60	1.1	98.9	0.0	4.84	1.62	0.77	0.82	0.52	9924	1260	12	0	0	0	0	logfile
✔	8XG1	38311	2025-05-14	2023-12-14	2.53	2.26	2.54	2.0	0.004	0.95	0.0	0.06	19.94	0.00	2.199	5.84	4.51	3.6	96.4	0.0	-0.38	0.84	0.85	2.79	2.0	0.010	0.80	0.0	0.05	18.80	0.01	2.311	4.39	3.65	4.9	95.1	0.0	-0.57	0.24	0.84	0.85	3.04	11941	1464	9	0	20	0	0	logfile
✔	8XFS	38308	2025-05-13	2023-12-14	3.2	3.86	3.31	3.7	0.002	0.52	0.0	0.04	10.31	0.00	2.191	6.68	2.74	5.1	94.8	0.1	0.23	0.70	0.79	2.61	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.469	6.73	3.07	5.6	94.3	0.1	0.07	0.42	0.67	0.80	2.30	10983	1419	6	0	0	0	0	logfile
✔	8VCJ	43138	2025-05-29	2023-12-14	3.32	3.63	3.39	3.6	0.003	0.64	0.0	0.04	17.52	0.00	2.002	4.69	0.03	4.6	95.4	0.0	-0.73	0.69	0.83	2.26	3.6	0.003	0.67	0.0	0.04	18.52	0.00	2.029	4.66	1.08	3.4	96.5	0.0	-0.11	0.92	0.67	0.83	1.94	32232	3742	20	100	16	0	0	logfile
✔	8VCR	43139	2025-05-17	2023-12-14	3.0	2.18	2.94	2.0	0.008	0.78	0.0	0.05	13.52	0.01	2.139	3.13	0.00	4.0	96.0	0.0	0.07	0.80	0.80	3.92	2.0	0.007	0.72	0.0	0.05	15.75	0.00	2.469	5.09	2.12	3.3	96.7	0.0	0.81	0.40	0.81	0.82	3.97	15987	2040	18	0	21	0	0	logfile
✔	8VCT	43140	2025-05-26	2023-12-14	3.83	4.11	3.90	4.1	0.003	0.69	0.0	0.04	18.15	0.01	2.070	6.37	0.00	4.0	96.0	0.0	-1.11	0.69	0.76	1.24	4.1	0.004	0.70	0.0	0.04	19.44	0.00	1.882	7.85	1.69	5.1	94.8	0.0	-0.59	0.47	0.70	0.76	0.99	29000	3338	18	100	14	0	0	logfile
✔	8XFT	38309	2025-05-12	2023-12-14	3.24	3.25	2.61	3.2	0.003	0.52	0.0	0.04	10.57	0.00	2.208	6.93	1.54	5.5	94.5	0.0	0.22	0.68	0.83	3.29	3.2	0.003	0.62	0.0	0.04	13.63	0.00	2.406	6.76	2.47	5.7	94.3	0.0	0.21	0.39	0.74	0.86	2.87	8742	1122	4	0	0	0	0	logfile
✔	8RH1	19165	2025-05-20	2023-12-14	3.45	3.21	3.42	3.4	0.008	0.86	0.0	0.06	13.62	0.01	2.230	10.64	0.00	2.4	97.6	0.0	-0.79	0.76	0.79	2.71	3.3	0.005	0.62	0.0	0.04	15.83	0.00	2.462	7.50	3.15	2.1	97.9	0.0	-0.27	1.45	0.81	0.83	2.53	19560	2442	9	0	0	0	0	logfile
✔	8RGZ	19163	2025-05-20	2023-12-14	3.27	3.29	3.12	3.3	0.011	1.10	0.0	0.07	13.47	0.01	2.198	12.25	0.19	2.6	97.4	0.0	-0.38	0.72	0.82	3.39	3.3	0.004	0.62	0.0	0.04	15.52	0.00	2.461	8.56	2.26	2.9	97.1	0.0	-0.20	0.49	0.75	0.83	2.90	19545	2442	9	0	0	0	0	logfile
✔	8VCV	43141	2025-05-13	2023-12-14	2.8	3.10	2.90	3.1	0.006	0.99	0.0	0.05	15.78	0.01	2.095	3.17	0.00	2.5	97.5	0.0	-0.59	0.62	0.86	6.05	3.1	0.003	0.66	0.0	0.04	13.34	0.00	2.434	4.75	1.61	1.8	98.2	0.0	0.36	0.37	0.59	0.87	5.24	10466	1035	38	0	311	0	0	logfile
✔	8RH2	19166	2025-05-19	2023-12-14	3.12	3.16	3.04	3.2	0.005	0.58	0.0	0.05	14.37	0.01	2.205	7.05	0.05	1.9	98.1	0.0	0.07	0.78	0.86	3.67	3.2	0.003	0.50	0.0	0.04	15.64	0.00	2.544	5.24	1.95	2.0	98.0	0.0	0.41	0.33	0.80	0.88	3.35	19152	2421	9	0	0	0	0	logfile
✔	8VCH	43136	2025-05-11	2023-12-14	2.55	2.23	2.73	3.3	0.004	0.58	0.0	0.04	15.04	0.00	2.260	5.83	0.78	2.2	97.8	0.0	2.09	0.72	0.80	2.33	3.3	0.003	0.52	0.0	0.04	15.93	0.00	2.545	5.03	2.85	1.9	98.1	0.0	3.15	0.30	0.74	0.82	1.67	7614	1012	6	0	2	0	0	logfile
✔	8RH0	19164	2025-05-19	2023-12-14	3.44	3.40	3.32	3.4	0.005	0.62	0.0	0.05	14.04	0.01	2.202	6.74	0.00	1.1	98.9	0.0	0.19	0.79	0.85	3.38	3.4	0.005	0.60	0.0	0.04	15.96	0.00	2.494	5.25	2.93	2.5	97.5	0.0	0.05	1.26	0.78	0.86	3.18	19137	2421	9	0	0	0	0	logfile
✔	8XEZ	38298	2025-05-16	2023-12-13	3.15	3.75	3.18	3.4	0.004	0.59	0.0	0.04	13.80	0.00	1.985	5.04	0.38	3.7	96.3	0.1	-0.30	0.85	0.83	2.97	3.4	0.003	0.52	0.0	0.04	14.66	0.00	2.347	29.23	1.52	5.8	94.2	0.0	-0.46	0.54	0.85	0.86	2.22	14401	1528	2	0	0	0	2609	logfile
✔	8XFC	38301	2025-05-17	2023-12-13	3.89	4.30	3.88	4.0	0.005	0.95	9.0	0.06	14.65	0.00	2.081	13.55	2.28	9.0	90.6	0.4	-3.88	0.74	0.85	1.78	4.0	0.003	0.72	0.0	0.04	15.37	0.00	2.379	7.92	2.44	7.1	92.9	0.0	-1.05	0.57	0.74	0.85	1.18	12371	1626	5	0	2	0	0	logfile
✔	8RGA	19131	2025-05-12	2023-12-13	3.7	4.13	3.83	4.1	0.005	0.93	1.0	0.05	16.16	0.01	2.091	14.15	1.04	6.2	92.8	1.0	0.17	0.61	0.79	0.56	4.1	0.003	0.80	0.0	0.04	17.01	0.00	2.509	11.14	5.08	6.6	92.9	0.5	1.04	0.45	0.61	0.79	0.79	8802	1144	2	0	0	0	0	logfile
✔	8XFF	38303	2025-05-21	2023-12-13	3.16	3.83	3.25	3.5	0.012	1.07	0.0	0.07	11.06	0.01	2.224	5.50	0.87	6.1	93.7	0.2	-5.29	0.86	0.81	3.83	3.5	0.004	0.69	0.0	0.04	13.93	0.00	2.503	6.62	1.51	3.9	96.0	0.0	0.17	0.80	0.87	0.87	2.98	21142	2670	5	0	0	0	0	logfile

• ← previous
• Page 116 of 642
• next →