Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCi	38244	2025-05-12	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	18.00	0.01	2.379	11.82	4.48	7.1	92.4	0.4	-1.78	0.52	0.50	0.73	1.74	8842	1143	3	0	0	0	0	logfile
✔	8RDY	19078	2025-05-13	2023-12-08	3.33	3.51	3.40	3.5	0.003	0.50	0.0	0.04	17.79	0.00	1.901	3.46	0.33	3.6	96.4	0.0	1.19	0.66	0.84	2.04	3.5	0.002	0.50	0.0	0.04	17.66	0.00	1.921	2.28	1.00	3.3	96.7	0.0	1.27	0.19	0.66	0.84	1.96	10954	680	3	0	2	0	5450	logfile
✔	8XCC	38239	2025-05-10	2023-12-08	3.2	3.79	3.19	3.6	0.004	0.58	0.0	0.04	19.55	0.00	2.197	6.07	0.21	3.0	97.0	0.0	1.81	0.79	0.87	3.09	3.6	0.004	0.54	0.0	0.04	19.79	0.00	2.553	4.86	3.38	2.3	97.7	0.0	2.62	0.21	0.80	0.87	2.85	5617	546	4	56	0	0	0	logfile
✔	8RDE	19070	2025-05-20	2023-12-08	3.7	4.42	3.66	4.0	0.006	0.97	4.0	0.06	14.62	0.00	1.626	12.18	5.53	6.3	93.6	0.1	-2.02	0.76	0.59	1.07	4.1	0.003	0.78	1.0	0.05	14.04	0.01	2.159	10.19	2.63	7.6	92.4	0.0	-2.07	0.79	0.87	0.78	1.64	20050	2684	4	0	20	0	0	logfile
✔	8XCA	38238	2025-05-10	2023-12-08	3.1	3.84	3.14	3.5	0.002	0.53	0.0	0.03	21.67	0.00	2.212	7.23	0.17	2.7	97.3	0.0	1.11	0.79	0.87	3.07	3.5	0.002	0.53	0.0	0.03	21.54	0.00	2.429	6.18	3.09	2.7	97.3	0.0	1.37	0.73	0.79	0.86	3.20	7106	668	4	79	0	0	0	logfile
✔	8XCD	38240	2025-05-10	2023-12-08	3.49	3.79	3.48	3.9	0.005	0.66	0.0	0.04	18.64	0.01	2.156	9.36	0.32	4.3	95.7	0.0	0.81	0.56	0.68	1.45	3.8	0.003	0.61	0.0	0.04	16.17	0.00	2.569	8.39	4.60	3.1	96.9	0.0	1.08	1.23	0.64	0.79	1.52	5626	727	4	0	2	0	0	logfile
✔	8V91	43047	2025-05-13	2023-12-07	2.6	3.28	2.75	3.1	0.003	0.55	0.0	0.04	14.09	0.00	2.087	8.78	0.00	2.8	97.2	0.0	0.68	0.70	0.79	3.95	3.1	0.003	0.60	0.0	0.04	15.18	0.00	2.594	7.16	2.38	3.5	96.5	0.0	1.74	0.90	0.68	0.77	3.20	9913	1320	10	0	0	87	0	logfile
✔	8V93	43048	2025-05-10	2023-12-07	3.12	3.33	3.16	3.4	0.005	0.98	0.0	0.06	13.54	0.01	2.308	7.40	0.00	6.0	93.5	0.5	-1.91	0.52	0.47	0.68	3.3	0.004	0.77	0.0	0.05	15.68	0.01	2.407	17.19	3.12	6.3	93.5	0.2	-1.55	2.26	0.65	0.67	2.23	4686	614	5	0	0	0	0	logfile
✔	8V9D	43071	2025-05-18	2023-12-07	2.9	3.14	2.91	3.2	0.003	0.48	0.0	0.04	11.62	0.00	1.943	6.00	0.00	3.0	97.0	0.0	0.39	0.72	0.87	3.80	3.2	0.002	0.58	0.0	0.04	14.14	0.00	2.614	3.80	1.20	3.3	96.7	0.0	1.45	0.46	0.71	0.89	2.78	16683	2221	14	0	0	80	0	logfile
✔	8RCR	19057	2025-05-20	2023-12-07	3.6	3.95	3.75	3.8	0.012	0.80	0.0	0.05	14.08	0.00	1.903	14.64	0.00	3.7	96.2	0.1	1.54	0.62	0.74	1.59	3.8	0.003	0.74	0.0	0.04	15.47	0.00	2.469	11.18	1.62	3.8	96.1	0.1	1.97	0.44	0.62	0.75	1.19	19936	2420	8	0	12	0	0	logfile
✔	8XBU	38229	2025-05-29	2023-12-07	4.24	5.02	4.02	4.6	0.010	0.95	26.0	0.09	20.92	0.02	1.118	17.68	0.15	1.0	99.0	0.0	-0.07	0.87	0.79	—	4.6	0.004	0.63	0.0	0.04	20.92	0.00	2.273	12.01	0.00	1.6	98.4	0.0	1.19	1.38	0.88	0.80	—	32567	3398	20	309	0	0	0	logfile
✔	8XBT	38228	2025-05-25	2023-12-07	4.12	5.03	3.95	4.6	0.012	1.50	5.0	0.08	23.16	0.04	1.066	9.06	2.05	4.2	95.8	0.0	-1.25	0.87	0.77	—	4.6	0.004	0.64	0.0	0.04	22.41	0.00	2.425	12.02	0.00	2.7	97.3	0.0	0.81	1.31	0.87	0.79	—	27776	2770	18	309	0	0	0	logfile
✔	8XC1	38236	2025-05-15	2023-12-07	2.21	2.60	2.37	2.6	0.004	1.20	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.003	0.65	0.0	0.04	21.04	0.00	2.285	5.98	2.56	3.8	96.2	0.0	1.17	1.57	0.61	0.80	3.29	13542	1320	12	120	22	0	0	logfile
✔	8XBW	38231	2025-05-09	2023-12-07	2.89	5.59	1.81	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.25	0.0	0.06	23.77	0.01	2.512	25.80	2.48	1.7	98.3	0.0	-1.70	2.03	0.81	0.82	0.77	2671	242	5	36	0	0	0	logfile
✔	8XBS	38227	2025-05-13	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.19	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.006	0.75	0.0	0.05	17.70	0.01	2.442	4.91	2.73	3.5	96.5	0.0	1.80	1.12	0.70	0.87	4.41	10658	1282	8	0	22	0	0	logfile
✔	8XBF	38216	2025-05-28	2023-12-06	3.6	3.79	2.41	2.0	0.004	0.64	0.0	0.04	13.65	0.00	2.057	16.51	5.28	6.3	93.7	0.0	-1.37	0.78	0.60	0.91	2.0	0.003	0.64	0.0	0.04	14.43	0.00	2.465	12.29	2.71	6.1	93.9	0.0	-1.10	0.50	0.84	0.68	0.91	30099	3833	10	0	18	0	0	logfile
✔	8RC6	19049	2025-05-14	2023-12-06	3.3	2.08	3.27	3.4	0.005	0.59	0.0	0.04	12.31	0.00	1.989	6.15	0.58	1.4	98.4	0.1	-1.45	0.77	0.77	3.60	3.4	0.003	0.57	0.0	0.04	15.62	0.00	2.416	5.91	2.18	3.6	96.2	0.1	-0.41	0.68	0.76	0.77	3.10	12194	780	6	0	0	0	6076	logfile
✔	8V8S	43044	2025-05-10	2023-12-06	2.2	2.62	2.16	2.5	0.002	0.47	0.0	0.04	14.02	0.00	2.203	6.43	0.00	3.2	96.8	0.0	0.33	0.63	0.78	4.97	2.5	0.003	0.60	0.0	0.04	14.48	0.00	2.645	5.60	2.16	3.6	96.4	0.0	2.00	1.59	0.64	0.78	4.14	6717	892	8	0	0	101	0	logfile
✔	8RC2	19045	2025-05-20	2023-12-05	3.1	3.51	3.00	3.3	0.006	0.62	0.0	0.04	17.11	0.01	2.046	7.49	0.42	1.3	98.7	0.0	0.85	0.73	0.82	3.99	3.4	0.003	0.61	0.0	0.04	18.27	0.00	2.498	6.55	1.26	1.3	98.7	0.0	1.39	1.20	0.79	0.87	3.56	19755	2304	12	94	1	0	0	logfile
✔	8RC1	19042	2025-05-15	2023-12-05	3.7	4.09	3.52	3.9	0.002	0.47	0.0	0.04	11.15	0.00	1.994	5.65	1.71	2.3	97.7	0.0	1.63	0.75	0.85	3.10	3.9	0.002	0.56	0.0	0.04	13.33	0.00	2.007	6.96	1.79	2.3	97.7	0.0	1.46	0.48	0.74	0.84	2.47	13235	1722	9	2	93	0	0	logfile

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