Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WH3	37527	2025-05-21	2023-09-22	2.87	3.11	2.99	3.2	0.003	0.57	0.0	0.04	17.91	0.00	2.188	8.38	1.97	4.0	96.0	0.0	0.12	0.62	0.74	2.38	3.1	0.006	0.66	0.0	0.05	18.06	0.00	2.468	7.14	2.54	4.7	95.3	0.0	-0.17	0.94	0.65	0.83	2.38	22278	2778	6	0	0	0	0	logfile
✔	8UBB	42081	2025-05-13	2023-09-22	3.23	3.27	3.07	3.2	0.010	1.21	1.0	0.06	25.82	0.01	2.199	41.97	20.00	10.7	85.7	3.6	-4.10	0.70	0.74	3.02	3.2	0.005	0.81	0.0	0.04	23.10	0.01	2.280	25.23	2.95	7.3	91.9	0.8	-0.96	0.95	0.74	0.76	2.08	10349	891	9	148	0	0	0	logfile
✔	8UAV	42072	2025-05-19	2023-09-22	2.37	3.36	2.48	3.0	0.002	0.41	0.0	0.04	16.27	0.00	2.303	5.20	0.05	1.2	98.8	0.0	1.72	0.82	0.89	3.81	3.0	0.004	0.52	0.0	0.04	16.43	0.00	2.633	5.74	0.22	1.0	99.0	0.0	0.97	0.28	0.82	0.89	3.99	17740	2310	10	0	0	0	0	logfile
✔	8WGX	37520	2025-05-12	2023-09-22	3.47	3.84	3.51	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.50	0.0	0.04	16.30	0.00	2.397	3.99	1.52	2.9	97.1	0.0	1.85	0.45	0.55	0.76	2.03	8760	547	2	0	2	0	4363	logfile
✔	8WH8	37533	2025-05-16	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.005	0.68	0.0	0.04	25.73	0.00	2.387	9.29	2.76	4.4	95.5	0.1	1.12	0.96	0.84	0.84	1.16	14304	1149	12	250	1	0	0	logfile
✔	8WH5	37529	2025-05-16	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.64	0.0	0.03	25.86	0.00	2.492	8.76	1.52	4.2	95.5	0.3	1.41	1.00	0.87	0.85	0.95	14663	1156	11	266	0	0	0	logfile
✔	8WGW	37517	2025-05-10	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.60	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.005	0.65	0.0	0.04	16.91	0.00	2.579	6.47	2.30	5.2	94.8	0.0	-0.05	0.99	0.63	0.78	3.07	6564	794	5	0	9	0	0	logfile
✔	8WHA	37537	2025-05-19	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.69	0.0	0.04	23.75	0.00	2.363	9.81	0.00	5.4	94.5	0.1	0.80	1.66	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8WGR	37515	2025-05-12	2023-09-22	2.75	3.15	2.83	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.58	0.0	0.04	16.99	0.00	2.479	2.83	1.08	2.9	97.1	0.0	1.63	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile
✔	8WGE	37511	2025-05-15	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	3.2	0.002	0.53	0.0	0.04	16.17	0.00	2.619	6.55	2.09	2.4	97.6	0.0	1.28	0.29	0.67	0.86	2.55	13515	1740	10	0	5	0	0	logfile
✔	8UAH	42064	2025-05-09	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.003	0.72	0.0	0.04	20.07	0.00	2.513	6.22	3.90	12.8	87.0	0.2	-3.43	0.88	0.71	0.84	2.16	3534	451	2	0	0	0	0	logfile
✔	8WFZ	37500	2025-05-21	2023-09-20	4.3	5.11	4.38	4.4	0.006	0.89	5.0	0.06	13.96	0.01	2.063	22.79	0.56	2.4	97.6	0.0	1.10	0.68	0.77	—	4.4	0.004	0.72	0.0	0.04	14.02	0.00	2.362	21.08	0.00	4.4	95.6	0.0	0.46	2.45	0.69	0.81	—	21266	2624	4	0	0	0	0	logfile
✔	8UAD	42060	2025-05-14	2023-09-20	2.77	2.99	2.87	3.0	0.009	1.04	0.0	0.06	20.43	0.01	2.216	4.24	0.71	3.6	96.4	0.0	-0.82	0.72	0.79	3.97	3.0	0.004	0.70	0.0	0.04	14.79	0.00	2.473	2.73	1.89	2.4	97.6	0.0	0.25	0.98	0.63	0.80	3.49	12318	1533	24	0	48	0	0	logfile
✔	8UA3	42049	2025-05-10	2023-09-20	3.8	4.06	3.83	4.0	0.007	0.92	0.0	0.05	18.05	0.01	2.166	12.30	0.60	7.7	91.8	0.5	-2.26	0.68	0.80	2.08	4.0	0.004	0.79	0.0	0.05	18.52	0.00	2.562	8.46	5.42	8.7	91.1	0.2	-1.68	0.73	0.71	0.82	2.20	4450	570	3	0	0	0	0	logfile
✔	8WFS	37498	2025-05-11	2023-09-20	3.36	2.57	3.40	2.2	0.005	0.89	0.0	0.05	19.14	0.01	2.261	13.55	0.94	5.8	94.2	0.0	-1.77	0.73	0.75	1.67	2.2	0.004	0.83	0.0	0.05	15.93	0.01	2.503	10.36	4.71	6.8	93.2	0.0	-1.25	0.31	0.74	0.77	1.41	6274	808	13	0	14	0	0	logfile
✔	8WG3	37501	2025-05-10	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.67	0.0	0.04	16.12	0.00	2.371	7.22	3.09	3.8	96.2	0.0	1.33	2.31	0.56	0.77	1.41	4585	548	2	0	4	0	0	logfile
✔	8UA9	42055	2025-05-30	2023-09-20	3.0	2.36	2.97	2.1	0.020	1.33	0.0	0.07	17.85	0.01	1.983	7.05	3.56	1.0	98.9	0.0	-1.54	0.53	0.80	2.97	2.1	0.003	0.74	0.0	0.05	17.73	0.01	2.476	8.20	4.39	5.7	94.2	0.1	-0.62	0.44	0.53	0.80	2.72	33106	4256	25	0	9	0	0	logfile
✔	8U9Y	42041	2025-05-15	2023-09-20	3.7	4.00	3.72	3.9	0.005	0.88	0.0	0.07	23.72	0.01	2.079	7.40	0.14	9.6	90.4	0.0	-0.76	0.72	0.75	2.67	3.9	0.004	0.71	0.0	0.05	16.84	0.00	2.367	6.71	2.79	9.9	90.0	0.1	-0.47	1.65	0.69	0.74	2.16	12951	881	10	0	14	0	6188	logfile
✔	8UA7	42053	2025-05-13	2023-09-20	3.3	3.66	3.33	3.4	0.004	0.67	0.0	0.04	28.72	0.01	2.099	12.79	5.54	10.6	89.0	0.4	-1.00	0.78	0.77	0.81	3.4	0.004	0.66	0.0	0.03	28.66	0.00	2.078	9.67	7.12	10.1	89.4	0.5	-0.28	1.04	0.78	0.78	0.86	11263	778	10	260	0	0	0	logfile
✔	8UA8	42054	2025-05-30	2023-09-20	3.7	2.76	3.58	3.0	0.014	1.40	2.0	0.07	18.92	0.01	1.974	8.52	1.19	0.4	99.2	0.4	-1.98	0.46	0.79	2.58	3.1	0.006	0.93	0.0	0.05	17.77	0.01	2.231	13.23	6.41	6.4	93.3	0.2	-1.40	0.92	0.46	0.80	2.36	33212	4267	32	0	33	0	0	logfile

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