Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JTB	36639	2025-05-09	2023-06-21	2.93	3.11	2.90	3.2	0.006	0.94	1.0	0.06	15.62	0.01	2.211	5.58	1.35	1.1	98.4	0.5	0.86	0.63	0.86	1.40	3.2	0.004	0.69	0.0	0.04	16.60	0.01	2.567	2.62	2.36	1.9	98.1	0.0	1.70	0.93	0.63	0.86	0.98	2808	376	2	0	1	0	0	logfile
✔	8JTC	36640	2025-05-09	2023-06-21	3.52	3.71	3.54	3.7	0.007	0.94	0.0	0.05	14.32	0.01	2.240	7.41	0.33	3.4	96.6	0.0	1.13	0.56	0.81	1.82	3.7	0.003	0.71	0.0	0.04	15.02	0.01	2.571	8.59	2.63	2.8	97.2	0.0	2.28	0.30	0.57	0.81	1.53	2941	391	2	0	1	0	0	logfile
✔	8JTA	36638	2025-05-09	2023-06-21	3.36	3.64	3.36	3.6	0.013	1.26	0.0	0.07	14.05	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.003	0.77	0.0	0.04	15.38	0.01	2.488	6.68	3.67	3.1	96.9	0.0	1.46	0.50	0.62	0.87	1.53	2879	386	2	0	1	0	0	logfile
✔	8PiD	17681	2025-05-26	2023-06-21	3.0	3.69	3.01	3.3	0.002	0.46	0.0	0.04	18.10	0.00	1.935	7.85	0.28	2.4	97.6	0.0	1.18	0.92	0.87	2.01	3.3	0.005	0.62	0.0	0.04	18.44	0.00	1.951	7.28	1.77	3.2	96.8	0.0	0.75	0.32	0.91	0.89	1.94	28297	3371	10	90	3	0	0	logfile
✔	8JT5	36633	2025-05-09	2023-06-21	3.06	3.30	3.09	3.3	0.005	0.81	1.0	0.05	15.38	0.01	2.268	6.88	1.67	2.1	97.6	0.3	1.66	0.61	0.85	2.09	3.3	0.003	0.66	0.0	0.04	15.70	0.01	2.595	6.53	3.67	1.8	98.2	0.0	2.08	0.36	0.61	0.85	1.37	2854	384	2	0	1	0	0	logfile
✔	8JSi	36621	2025-05-15	2023-06-20	2.9	3.18	3.05	3.2	0.004	0.62	0.0	0.04	20.29	0.01	1.846	8.85	0.81	7.7	92.3	0.0	-0.66	0.73	0.86	2.80	3.2	0.003	0.63	0.0	0.04	20.69	0.00	1.915	6.33	1.99	4.7	95.3	0.0	0.66	0.39	0.68	0.85	3.16	13377	1466	12	64	7	0	0	logfile
✔	8PHK	17668	2025-05-26	2023-06-20	3.1	3.76	3.16	3.4	0.002	0.53	0.0	0.04	18.81	0.00	2.027	9.67	0.10	2.5	97.4	0.0	1.00	0.91	0.85	1.06	3.4	0.002	0.57	0.0	0.04	18.93	0.00	1.994	7.38	1.84	2.7	97.3	0.0	0.90	0.65	0.91	0.90	1.70	28225	3370	10	88	3	0	0	logfile
✔	8JSP	36626	2025-05-11	2023-06-20	3.65	3.82	3.54	3.8	0.006	0.79	0.0	0.05	14.06	0.00	2.204	13.73	0.86	5.9	94.1	0.0	-0.89	0.61	0.71	1.51	3.8	0.004	0.68	0.0	0.04	16.12	0.00	2.459	9.40	2.37	4.7	95.3	0.0	-0.37	1.07	0.64	0.72	1.32	8599	1102	6	0	1	0	0	logfile
✔	8PHo	17669	2025-05-29	2023-06-20	2.34	2.07	2.31	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.003	0.53	0.0	0.04	17.07	0.00	2.457	1.96	0.63	0.5	99.5	0.0	1.12	0.49	0.72	0.85	4.53	32172	3804	24	0	0	720	0	logfile
✔	8T7H	41092	2025-05-15	2023-06-20	3.3	2.38	—	3.4	0.003	0.63	0.0	0.04	13.36	0.00	2.217	7.98	0.00	4.3	95.7	0.0	0.31	0.72	0.68	2.37	3.4	0.004	0.65	0.0	0.05	15.21	0.00	2.607	6.86	1.58	4.3	95.7	0.0	0.27	0.32	0.78	0.77	2.17	13100	1794	6	0	2	0	0	logfile
✔	8JSN	36624	2025-05-17	2023-06-20	3.4	3.48	3.32	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.60	0.0	0.04	16.82	0.00	2.506	4.81	1.60	5.4	94.1	0.5	1.01	0.31	0.80	0.88	2.17	14856	1856	7	10	1	0	0	logfile
✔	8JSW	36628	2025-05-09	2023-06-20	2.84	3.08	2.89	3.1	0.009	0.91	0.0	0.05	14.55	0.01	2.277	4.12	0.67	2.6	97.4	0.0	-0.02	0.67	0.86	2.03	3.1	0.003	0.69	0.0	0.04	15.29	0.01	2.585	3.61	2.00	1.8	98.2	0.0	1.54	0.93	0.63	0.85	2.33	2859	384	2	0	1	0	0	logfile
✔	8JSL	36622	2025-05-16	2023-06-20	2.95	3.14	2.85	3.1	0.003	0.57	0.0	0.04	14.70	0.00	2.203	3.93	0.00	6.2	93.4	0.5	0.78	0.77	0.88	2.99	3.1	0.002	0.59	0.0	0.04	16.61	0.00	2.333	4.11	1.63	5.6	93.9	0.5	1.03	0.92	0.76	0.89	2.71	14069	1751	7	10	1	0	0	logfile
✔	8JSX	36629	2025-05-09	2023-06-20	3.16	3.39	3.11	3.4	0.005	0.84	0.0	0.06	15.28	0.01	2.440	3.46	1.00	2.1	97.9	0.0	2.26	0.64	0.87	2.00	3.4	0.004	0.68	0.0	0.04	15.88	0.01	2.432	2.94	2.00	2.1	97.9	0.0	2.31	0.34	0.63	0.88	0.96	2828	378	2	0	1	0	0	logfile
✔	8T79	41088	2025-05-14	2023-06-20	3.04	3.75	3.12	3.5	0.005	1.00	0.0	0.05	18.70	0.01	2.231	5.49	0.39	2.6	97.4	0.0	-1.59	0.80	0.83	2.31	3.5	0.005	0.65	0.0	0.04	18.90	0.00	2.501	10.75	2.13	3.4	96.6	0.0	0.19	0.95	0.81	0.84	2.68	11903	1146	4	118	0	0	0	logfile
✔	8PHW	17677	2025-05-10	2023-06-20	3.6	2.46	3.61	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.2	0.002	0.64	0.0	0.04	14.34	0.00	2.592	6.91	3.79	5.4	94.6	0.0	-0.43	0.69	0.71	0.71	2.02	5359	689	5	0	2	0	0	logfile
✔	8T7A	41089	2025-05-17	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.72	0.0	0.05	13.49	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.003	0.54	0.0	0.04	15.40	0.00	2.549	4.08	3.21	1.4	98.6	0.0	0.87	0.33	0.70	0.84	3.91	15819	2040	15	0	3	0	0	logfile
✔	8T7E	41091	2025-05-16	2023-06-20	3.08	3.40	3.08	3.3	0.005	1.09	0.0	0.06	18.22	0.01	2.288	6.80	0.69	7.6	92.3	0.1	-2.94	0.70	0.63	1.75	3.3	0.003	0.75	0.0	0.04	19.63	0.00	2.539	12.49	2.78	8.6	91.3	0.1	-1.30	0.61	0.75	0.76	2.27	14273	1706	5	36	0	0	0	logfile
✔	8JSo	36625	2025-05-12	2023-06-20	3.4	3.73	3.46	3.7	0.003	0.67	0.0	0.04	13.94	0.00	2.220	9.19	0.10	5.1	94.9	0.0	-0.64	0.65	0.80	1.60	3.7	0.003	0.66	0.0	0.04	15.98	0.00	2.541	7.19	2.33	4.3	95.7	0.0	-0.08	0.94	0.64	0.80	0.95	9045	1145	6	0	1	0	0	logfile
✔	8JSM	36623	2025-05-17	2023-06-20	3.3	3.40	3.24	3.3	0.003	0.55	0.0	0.04	15.38	0.00	2.050	5.08	0.06	5.7	94.0	0.3	0.89	0.77	0.86	2.59	3.4	0.004	0.60	0.0	0.04	16.67	0.00	2.345	4.57	1.72	6.2	93.5	0.3	0.97	1.69	0.78	0.90	2.29	14856	1856	7	10	1	0	0	logfile

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