Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9J8M	61231	2025-05-17	2024-08-21	3.82	4.29	3.81	3.8	0.003	0.52	0.0	0.03	26.32	0.00	2.264	5.47	1.49	0.9	99.1	0.0	3.02	0.83	0.75	1.17	3.9	0.005	0.65	0.0	0.04	27.33	0.00	2.415	10.27	2.07	2.7	97.3	0.0	2.37	0.70	0.91	0.85	1.57	15831	1047	13	368	0	0	0	logfile
✔	9J8Z	61249	2025-05-12	2024-08-21	3.36	4.09	3.52	3.9	0.004	0.79	0.0	0.05	17.03	0.01	2.128	12.58	1.42	5.4	94.6	0.0	-0.36	0.66	0.79	1.74	3.9	0.003	0.67	0.0	0.04	16.91	0.00	2.420	6.74	4.49	4.1	95.9	0.0	0.44	1.22	0.70	0.84	1.60	8611	1121	5	0	0	0	0	logfile
✔	9J8C	61227	2025-05-10	2024-08-21	2.9	3.01	2.81	3.1	0.003	0.67	0.0	0.05	15.96	0.00	2.275	6.00	0.00	2.6	97.4	0.0	1.43	0.60	0.86	2.38	3.1	0.003	0.52	0.0	0.04	16.42	0.00	2.298	3.28	1.97	2.6	97.2	0.2	2.26	0.26	0.66	0.89	2.30	4418	543	3	0	6	14	0	logfile
✔	9J8o	61233	2025-05-28	2024-08-21	4.05	5.26	3.99	4.4	0.007	0.67	0.0	0.04	26.59	0.00	2.111	6.96	3.38	3.0	97.0	0.0	1.66	0.78	0.65	—	4.4	0.004	0.59	0.0	0.03	26.34	0.00	2.393	9.97	0.00	1.7	98.3	0.0	2.59	0.71	0.91	0.86	—	32116	2250	28	704	0	0	0	logfile
✔	9J8B	61226	2025-05-09	2024-08-21	3.9	4.08	3.83	4.0	0.003	0.64	0.0	0.04	14.29	0.00	2.219	9.07	0.00	6.6	93.4	0.0	0.04	0.58	0.81	1.05	4.0	0.003	0.68	0.0	0.04	16.95	0.00	2.592	5.92	0.91	6.2	93.8	0.0	0.83	1.32	0.58	0.81	0.91	4158	524	1	0	0	0	0	logfile
✔	9J8P	61237	2025-05-10	2024-08-21	3.21	3.65	—	1.5	0.007	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.004	0.76	0.0	0.04	21.64	0.00	2.314	13.14	2.13	4.1	95.9	0.0	0.19	2.59	0.93	0.87	1.34	7061	623	3	106	1	0	0	logfile
✔	9D90	46655	2025-05-23	2024-08-20	3.91	4.13	3.87	4.1	0.005	1.02	0.0	0.06	15.81	0.01	2.258	4.80	0.11	5.7	94.2	0.1	-1.83	0.74	0.81	1.37	4.1	0.004	0.76	0.0	0.05	16.52	0.00	2.389	9.56	2.89	5.3	94.7	0.0	-0.85	0.50	0.75	0.83	1.49	24524	3151	27	0	18	0	0	logfile
✔	9D8Y	46653	2025-05-22	2024-08-20	4.06	4.25	4.08	4.2	0.005	1.00	0.0	0.06	15.18	0.01	2.268	4.31	0.10	6.2	93.8	0.1	-1.95	0.67	0.73	—	4.6	0.004	0.75	0.0	0.05	14.36	0.00	2.515	8.72	0.05	7.5	92.5	0.1	-0.95	0.47	0.69	0.77	—	18800	2384	21	0	19	0	0	logfile
✔	9GiX	51380	2025-05-09	2024-08-19	3.65	3.92	3.56	3.9	0.007	0.89	0.0	0.07	12.01	0.01	2.488	0.92	0.00	0.9	99.1	0.0	0.66	0.57	0.77	2.38	3.9	0.003	0.67	0.0	0.04	16.49	0.00	2.634	7.19	4.29	0.9	99.1	0.0	2.55	1.37	0.61	0.79	1.09	2733	344	3	0	0	0	0	logfile
✔	9J7V	61211	2025-05-09	2024-08-19	3.3	3.54	3.37	3.6	0.007	0.97	0.0	0.04	16.85	0.00	2.210	2.17	0.00	4.6	95.4	0.0	1.94	0.60	0.84	1.45	3.6	0.003	0.48	0.0	0.04	16.03	0.00	2.634	2.34	0.65	2.6	97.4	0.0	1.98	0.25	0.58	0.85	1.80	2975	352	2	0	8	0	0	logfile
✔	9D8P	46645	2025-05-09	2024-08-19	3.2	3.70	3.12	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.51	0.0	0.04	15.76	0.00	2.506	5.89	3.63	2.1	97.9	0.0	0.19	0.18	0.79	0.84	3.24	4073	537	4	0	0	0	0	logfile
✔	9J7o	61209	2025-05-10	2024-08-19	2.77	2.99	2.82	3.0	0.006	0.79	0.0	0.05	16.11	0.01	2.292	5.95	5.31	2.3	97.7	0.0	0.97	0.63	0.86	2.66	3.0	0.002	0.52	0.0	0.04	15.72	0.00	2.629	3.66	3.10	1.5	98.5	0.0	1.72	0.34	0.63	0.87	2.42	4344	533	2	0	6	10	0	logfile
✔	9J7N	61208	2025-05-10	2024-08-19	3.14	3.44	3.25	3.5	0.006	0.83	1.0	0.06	17.16	0.01	2.229	6.75	2.16	4.5	95.5	0.0	0.85	0.47	0.79	2.15	3.5	0.003	0.55	1.0	0.04	16.92	0.00	2.607	4.14	3.02	4.5	95.5	0.0	1.01	0.23	0.56	0.84	2.39	4517	544	3	0	11	5	0	logfile
✔	9J7M	61207	2025-05-10	2024-08-19	2.82	3.08	2.92	3.1	0.006	0.82	0.0	0.06	15.91	0.01	2.205	4.34	3.43	3.0	97.0	0.0	1.19	0.62	0.87	3.49	3.1	0.002	0.48	0.0	0.04	15.02	0.00	2.317	2.82	2.36	2.2	97.8	0.0	1.92	0.88	0.59	0.86	3.17	4552	543	2	0	12	15	0	logfile
✔	9J7C	61201	2025-05-12	2024-08-18	3.0	3.30	3.01	3.3	0.005	0.89	4.0	0.05	15.07	0.02	2.235	6.26	0.63	5.9	93.8	0.3	-4.19	0.62	0.85	2.34	3.3	0.003	0.65	0.0	0.04	14.82	0.00	2.568	3.82	1.79	4.5	95.5	0.0	-1.44	0.99	0.69	0.89	3.21	9252	1192	6	0	9	6	0	logfile
✔	9D84	46628	2025-05-19	2024-08-18	2.4	2.91	2.25	3.0	0.005	0.73	0.0	0.05	14.82	0.00	1.924	22.28	1.25	3.1	96.8	0.1	0.12	0.64	0.45	0.64	2.7	0.004	0.70	0.0	0.05	16.55	0.00	2.223	12.88	1.90	3.3	96.7	0.0	-0.22	1.53	0.86	0.92	4.31	19029	2529	6	0	0	0	0	logfile
✔	9J7B	61200	2025-05-21	2024-08-18	4.12	4.43	4.20	4.2	0.003	0.61	0.0	0.04	14.97	0.00	2.190	10.69	0.00	5.5	94.5	0.0	-1.08	0.80	0.69	—	4.2	0.003	0.66	0.0	0.04	14.77	0.00	2.343	15.66	0.00	6.4	93.6	0.0	0.01	1.10	0.83	0.78	—	20578	2679	11	0	21	0	0	logfile
✔	9J77	61196	2025-05-28	2024-08-18	3.56	3.84	3.60	3.7	0.003	0.57	0.0	0.04	15.14	0.00	2.055	6.74	0.00	5.1	94.9	0.0	-1.33	0.78	0.80	1.79	3.7	0.003	0.64	0.0	0.04	17.03	0.00	2.039	10.48	1.88	4.9	95.1	0.0	0.34	0.68	0.78	0.78	1.51	26209	3248	14	0	26	0	0	logfile
✔	9D81	46624	2025-05-16	2024-08-18	2.4	3.06	2.43	3.0	0.008	0.89	3.0	0.05	14.87	0.01	1.518	75.36	1.41	3.9	95.5	0.6	-0.83	0.66	0.47	0.36	2.9	0.006	0.83	0.0	0.05	16.59	0.01	1.384	14.40	2.34	4.4	95.1	0.5	-1.21	1.99	0.84	0.90	5.01	14475	1875	3	0	0	0	0	logfile
✔	9J78	61197	2025-05-27	2024-08-18	3.88	4.19	3.92	4.0	0.004	0.63	0.0	0.04	15.31	0.00	2.213	8.99	0.00	5.8	94.2	0.0	-0.93	0.81	0.80	1.21	4.0	0.003	0.66	0.0	0.04	16.94	0.00	2.521	12.32	1.48	5.5	94.5	0.0	0.37	1.35	0.82	0.83	1.02	25192	3124	12	0	17	0	0	logfile

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