Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GGM	51337	2025-05-17	2024-08-13	2.71	3.51	2.73	3.3	0.004	0.78	0.0	0.05	15.29	0.01	2.085	13.00	2.51	2.8	97.2	0.0	-1.20	0.73	0.73	2.82	3.3	0.003	0.64	0.0	0.04	16.02	0.00	2.029	8.35	3.45	2.4	97.6	0.0	-0.41	0.46	0.74	0.75	2.59	11460	1568	6	0	2	0	0	logfile
✔	9GGE	51329	2025-05-16	2024-08-13	2.69	3.11	2.71	3.1	0.003	0.53	0.0	0.04	12.11	0.00	1.742	6.78	0.49	1.8	98.2	0.0	0.99	0.62	0.72	2.66	3.1	0.003	0.57	0.0	0.04	16.95	0.00	2.231	8.06	2.90	1.9	98.1	0.0	0.82	1.00	0.60	0.74	2.07	13855	1628	6	38	2	0	0	logfile
✔	9GG6	51325	2025-05-09	2024-08-13	3.36	3.18	3.06	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.73	0.0	0.05	17.63	0.00	2.563	4.57	6.43	9.2	90.8	0.0	-2.26	0.54	0.39	0.89	4.21	2142	288	3	0	0	0	0	logfile
✔	9GG1	51320	2025-05-09	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.73	0.0	0.05	15.81	0.00	2.534	2.72	0.81	3.1	96.0	1.0	-2.31	0.91	0.46	0.92	7.14	3232	428	4	0	0	0	0	logfile
✔	9D4N	46565	2025-05-16	2024-08-12	2.9	3.62	2.97	3.3	0.004	0.55	0.0	0.05	15.81	0.00	1.880	18.68	0.00	2.2	97.8	0.0	1.35	0.72	0.90	3.69	3.3	0.004	0.56	0.0	0.04	15.96	0.00	1.956	5.41	0.38	2.0	98.0	0.0	1.27	0.91	0.69	0.87	3.00	14946	1866	13	18	12	0	0	logfile
✔	9D46	46550	2025-05-17	2024-08-12	3.06	3.79	3.12	3.5	0.002	0.48	0.0	0.04	15.00	0.00	1.946	10.93	0.00	1.3	98.7	0.0	1.25	0.71	0.87	3.32	3.5	0.003	0.56	0.0	0.04	14.78	0.00	1.967	7.85	0.51	1.3	98.7	0.0	1.35	0.39	0.69	0.86	2.90	15188	1924	13	18	18	0	0	logfile
✔	9D43	46548	2025-05-13	2024-08-12	3.39	4.23	3.39	3.8	0.002	0.48	0.0	0.04	15.66	0.00	2.206	5.57	0.09	3.6	96.4	0.0	1.93	0.90	0.84	1.22	3.8	0.002	0.51	0.0	0.04	16.07	0.00	2.621	5.57	1.36	3.7	96.3	0.0	2.59	0.36	0.90	0.84	1.41	9754	1189	1	0	0	0	0	logfile
✔	9D45	46549	2025-05-14	2024-08-12	3.1	3.73	3.09	3.5	0.003	0.61	0.0	0.04	15.68	0.00	2.205	5.47	0.72	2.2	97.8	0.0	1.75	0.85	0.86	2.46	3.5	0.002	0.52	0.0	0.04	15.81	0.00	1.984	5.30	1.20	2.0	98.0	0.0	2.36	0.87	0.88	0.90	2.12	11123	1354	4	0	2	0	0	logfile
✔	9GG0	51319	2025-05-09	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.55	0.0	0.05	15.90	0.00	2.567	1.23	2.20	2.5	97.5	0.0	-2.13	0.33	0.39	0.88	5.78	2385	321	3	0	0	0	0	logfile
✔	9J52	61140	2025-05-10	2024-08-11	3.1	3.36	3.18	3.4	0.004	0.55	0.0	0.04	12.86	0.00	2.100	10.21	2.36	6.5	93.4	0.1	0.50	0.54	0.77	2.63	3.4	0.003	0.61	0.0	0.04	15.18	0.00	2.385	10.44	1.33	5.0	95.0	0.0	1.50	1.15	0.54	0.76	1.95	6593	764	4	0	5	0	0	logfile
✔	9J51	61139	2025-05-10	2024-08-11	3.1	3.34	3.14	3.4	0.003	0.55	0.0	0.04	14.55	0.00	2.092	9.85	2.66	5.2	94.8	0.0	0.40	0.53	0.75	2.04	3.4	0.003	0.63	0.0	0.04	16.05	0.00	2.422	11.06	2.81	5.4	94.6	0.0	0.55	1.14	0.53	0.75	2.08	6581	762	4	0	5	0	0	logfile
✔	9J4X	61138	2025-05-10	2024-08-10	2.9	3.08	2.90	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.004	0.56	0.0	0.04	15.54	0.00	2.590	7.36	1.47	4.4	95.6	0.0	1.55	0.33	0.61	0.83	2.20	6588	764	4	0	4	0	0	logfile
✔	9D39	46528	2025-05-23	2024-08-09	3.65	3.33	—	3.7	0.003	0.57	0.0	0.04	17.77	0.00	2.219	12.35	0.19	7.4	92.5	0.1	-1.47	0.78	0.78	1.34	3.7	0.003	0.63	0.0	0.04	17.70	0.00	2.414	10.54	2.73	7.2	92.6	0.2	-1.18	0.32	0.77	0.76	1.12	24275	3134	10	0	5	0	0	logfile
✔	9D3A	46529	2025-05-23	2024-08-09	3.78	4.08	3.86	4.0	0.003	0.50	0.0	0.04	11.56	0.00	2.190	7.34	1.55	6.5	93.5	0.0	-1.93	0.67	0.66	2.13	4.0	0.003	0.65	0.0	0.04	13.89	0.00	2.452	7.53	2.41	5.8	94.2	0.0	-1.40	2.62	0.68	0.67	1.79	24270	3133	13	0	6	0	0	logfile
✔	9D3D	46532	2025-05-18	2024-08-09	3.41	3.73	3.55	3.7	0.003	0.64	0.0	0.04	10.40	0.00	1.972	4.07	1.04	3.0	97.0	0.0	-1.46	0.73	0.85	3.48	3.7	0.003	0.74	0.0	0.05	13.11	0.00	2.440	4.39	3.00	3.9	96.1	0.0	-0.62	0.46	0.74	0.86	2.70	17243	1973	50	0	130	0	0	logfile
✔	9D32	46512	2025-05-10	2024-08-09	3.1	3.43	3.09	3.5	0.004	0.60	0.0	0.04	11.07	0.00	2.012	4.59	3.02	2.1	97.9	0.0	0.80	0.67	0.80	4.48	3.5	0.002	0.50	0.0	0.04	13.62	0.00	2.280	3.91	2.31	1.7	98.3	0.0	1.48	0.36	0.67	0.80	3.32	6130	778	5	0	11	0	0	logfile
✔	9D37	46526	2025-05-23	2024-08-09	3.34	2.50	—	2.0	0.002	0.46	0.0	0.04	12.56	0.00	2.266	4.72	1.44	5.5	94.5	0.0	-1.98	0.79	0.77	2.61	2.0	0.003	0.56	0.0	0.04	14.37	0.00	2.528	4.83	2.52	5.1	94.8	0.1	-1.11	0.91	0.80	0.79	2.00	24274	3133	14	0	6	1	0	logfile
✔	9D38	46527	2025-05-23	2024-08-09	3.95	3.73	—	2.2	0.002	0.57	0.0	0.04	16.64	0.00	2.098	11.28	0.12	7.3	92.5	0.2	-1.80	0.80	0.76	0.89	2.2	0.003	0.65	0.0	0.04	16.79	0.00	2.450	8.92	3.83	7.5	92.2	0.2	-1.40	0.35	0.80	0.77	0.81	24024	3120	12	0	5	0	0	logfile
✔	9J3M	61119	2025-05-10	2024-08-08	2.77	3.11	2.78	3.0	0.005	0.76	0.0	0.04	12.77	0.01	2.196	11.06	0.00	3.5	96.5	0.0	-2.56	0.51	0.80	3.68	3.0	0.003	0.66	0.0	0.04	15.31	0.00	2.476	8.43	2.59	2.2	97.8	0.0	1.17	0.38	0.53	0.81	3.33	4700	599	3	0	2	0	0	logfile
✔	9J3o	61121	2025-05-10	2024-08-08	2.9	3.44	2.98	3.3	0.005	0.81	0.0	0.04	12.36	0.00	2.210	16.49	0.78	7.7	92.3	0.0	-3.34	0.41	0.73	3.90	3.3	0.004	0.71	0.0	0.04	15.69	0.00	2.573	9.46	2.92	6.5	93.5	0.0	-0.71	1.02	0.41	0.74	2.67	4845	617	2	0	0	0	0	logfile

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