Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HZN	35089	2025-05-13	2023-01-09	3.25	2.62	3.25	3.1	0.002	0.49	0.0	0.04	8.51	0.00	2.182	6.40	3.12	5.2	94.7	0.1	-3.99	0.78	0.77	2.37	3.0	0.003	0.71	0.0	0.04	14.25	0.00	2.518	11.26	3.83	6.4	93.5	0.1	-0.29	0.63	0.80	0.81	2.39	10200	1330	4	0	2	0	0	logfile
✔	8FRW	29409	2025-05-18	2023-01-09	2.92	3.40	2.84	3.2	0.005	0.79	0.0	0.05	13.23	0.01	2.312	2.81	0.11	1.5	98.5	0.0	0.72	0.80	0.84	2.23	3.2	0.002	0.58	0.0	0.04	14.18	0.00	2.651	2.69	0.81	1.9	98.1	0.0	1.26	0.60	0.80	0.86	3.06	16680	1975	15	0	20	5	0	logfile
✔	8FRZ	29411	2025-05-18	2023-01-09	2.75	3.28	2.70	3.1	0.003	0.79	0.0	0.05	13.71	0.00	2.290	3.53	0.00	5.4	94.6	0.0	0.31	0.79	0.84	3.21	3.1	0.004	0.63	0.0	0.04	15.08	0.00	2.581	4.19	2.96	5.6	94.4	0.0	0.69	1.22	0.79	0.86	3.05	16480	1955	10	0	20	0	0	logfile
✔	8FS8	29417	2025-05-21	2023-01-09	3.04	3.37	3.13	3.3	0.002	0.53	0.0	0.04	14.33	0.00	2.003	9.25	3.29	3.1	96.9	0.0	0.66	0.66	0.75	2.11	3.3	0.003	0.59	0.0	0.04	17.24	0.00	1.923	9.64	3.46	4.5	95.5	0.0	0.23	1.01	0.70	0.78	1.91	21906	2582	16	55	9	0	0	logfile
✔	8HZS	35090	2025-05-09	2023-01-09	3.3	3.29	2.25	3.5	0.003	0.55	0.0	0.05	11.89	0.00	2.235	15.06	0.00	7.1	92.9	0.0	-5.68	0.40	0.80	4.81	3.5	0.004	0.72	0.0	0.05	13.51	0.00	2.576	6.81	6.25	8.0	92.0	0.0	-3.80	1.12	0.40	0.81	3.88	2376	348	6	0	0	0	0	logfile
✔	8FRX	29410	2025-05-18	2023-01-09	2.7	3.26	2.58	3.0	0.004	0.77	0.0	0.05	12.62	0.00	2.253	3.29	0.00	3.1	96.9	0.0	0.20	0.80	0.85	3.56	2.9	0.002	0.60	0.0	0.04	14.05	0.00	2.576	3.98	1.25	2.7	97.3	0.0	0.86	0.39	0.80	0.86	3.47	16670	1975	10	0	20	0	0	logfile
✔	8FS5	29414	2025-05-22	2023-01-09	2.76	3.04	2.87	3.1	0.003	0.69	0.0	0.04	18.41	0.00	2.057	7.28	1.77	3.6	96.4	0.0	-0.31	0.61	0.81	2.53	3.1	0.006	0.65	0.0	0.05	18.86	0.00	1.927	7.25	3.16	4.2	95.8	0.0	0.25	0.34	0.64	0.85	3.12	22211	2619	16	58	9	0	0	logfile
✔	8FS6	29415	2025-05-22	2023-01-09	2.9	3.17	3.02	3.2	0.004	0.68	0.0	0.05	18.46	0.00	2.045	8.16	2.53	3.6	96.4	0.0	-0.78	0.62	0.81	2.33	3.2	0.003	0.56	0.0	0.04	18.59	0.00	1.925	6.90	3.04	3.2	96.8	0.0	0.50	0.91	0.65	0.84	2.33	22246	2621	16	58	9	0	0	logfile
✔	8FS3	29412	2025-05-21	2023-01-09	2.93	3.16	3.02	3.2	0.004	0.68	0.0	0.05	18.52	0.00	1.912	11.60	4.30	4.2	95.8	0.0	0.21	0.66	0.81	2.12	3.2	0.004	0.64	0.0	0.04	18.77	0.00	1.848	8.40	4.00	4.4	95.6	0.0	0.75	1.49	0.67	0.83	2.09	21222	2572	15	27	9	0	0	logfile
✔	8FS4	29413	2025-05-21	2023-01-09	2.94	3.30	3.09	3.3	0.004	0.65	0.0	0.05	18.51	0.00	1.835	9.66	2.69	3.6	96.4	0.0	-0.22	0.66	0.78	1.97	3.3	0.004	0.64	0.0	0.04	18.71	0.00	1.900	9.00	2.78	3.3	96.7	0.0	0.74	0.48	0.63	0.78	2.01	21291	2539	16	42	9	0	0	logfile
✔	8FS7	29416	2025-05-22	2023-01-09	2.85	3.12	2.94	3.1	0.003	0.56	0.0	0.04	19.01	0.00	2.068	6.91	2.37	3.4	96.6	0.0	0.67	0.68	0.84	2.77	3.1	0.004	0.61	0.0	0.04	19.25	0.00	1.917	6.50	3.21	3.9	96.1	0.0	0.95	0.36	0.71	0.87	2.97	22195	2616	16	58	9	0	0	logfile
✔	8HZB	35087	2025-05-09	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.003	0.62	0.0	0.05	18.23	0.00	2.485	6.73	4.33	10.3	89.7	0.0	-2.69	0.44	0.33	0.74	2.17	2976	432	6	0	0	0	0	logfile
✔	8FRS	29406	2025-05-28	2023-01-08	3.96	3.29	3.03	3.2	0.002	0.54	0.0	0.04	14.45	0.00	2.208	5.19	0.00	7.1	92.6	0.3	-1.68	0.40	0.86	3.34	3.2	0.003	0.59	0.0	0.04	15.80	0.00	2.484	4.68	1.14	7.5	92.2	0.3	-1.57	0.29	0.41	0.87	2.78	31497	4120	14	0	0	0	0	logfile
✔	8HZC	35088	2025-05-09	2023-01-08	3.2	3.16	2.81	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	3.3	0.003	0.47	0.0	0.05	16.23	0.00	2.640	5.18	3.21	9.4	90.6	0.0	-3.45	0.91	0.37	0.85	3.35	3108	450	6	0	0	0	0	logfile
✔	8FRP	29404	2025-05-11	2023-01-07	3.8	4.05	3.79	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.003	0.77	0.0	0.05	17.49	0.00	2.455	12.33	4.42	2.1	97.9	0.0	1.05	1.00	0.63	0.83	1.46	7488	934	5	0	21	0	0	logfile
✔	8FQE	29385	2025-05-11	2023-01-06	3.14	2.62	3.07	3.0	0.015	0.83	0.0	0.06	18.71	0.00	2.110	11.48	0.22	3.8	96.1	0.1	-1.27	0.58	0.76	1.49	3.1	0.003	0.60	0.0	0.04	18.30	0.00	2.563	8.92	3.02	3.1	96.9	0.0	-0.73	0.33	0.57	0.75	1.49	8386	1064	16	0	4	4	0	logfile
✔	8FQH	29388	2025-05-11	2023-01-06	3.43	3.05	3.41	3.4	0.015	0.76	0.0	0.06	18.49	0.00	2.135	10.23	0.11	3.0	97.0	0.0	-0.41	0.52	0.74	1.18	3.4	0.003	0.58	0.0	0.04	17.79	0.00	2.337	8.87	3.69	2.5	97.5	0.0	-0.27	1.25	0.52	0.75	1.03	8384	1064	13	0	4	2	0	logfile
✔	8C54	16433	2025-05-16	2023-01-06	2.52	2.38	2.50	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.003	0.50	0.0	0.04	17.20	0.00	2.547	5.48	1.71	1.7	98.3	0.0	1.01	0.16	0.72	0.84	4.92	14266	1928	12	0	4	330	0	logfile
✔	8FQD	29384	2025-05-11	2023-01-06	3.01	2.62	3.01	3.0	0.015	0.73	0.0	0.06	17.60	0.00	2.264	6.54	0.11	3.3	96.7	0.0	-0.68	0.64	0.83	1.81	3.0	0.003	0.56	0.0	0.04	16.62	0.00	2.548	7.50	1.79	3.6	96.3	0.1	-0.62	0.33	0.62	0.83	1.64	8384	1064	14	0	4	2	0	logfile
✔	8HYA	35085	2025-05-16	2023-01-06	3.4	3.97	3.57	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	3.9	0.004	0.68	0.0	0.04	16.43	0.00	2.476	11.83	2.69	6.0	94.0	0.0	1.26	0.47	0.59	0.75	1.02	14586	1856	4	0	6	0	0	logfile

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