Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CTJ	45908	2025-05-16	2024-07-25	3.74	4.08	3.88	4.1	0.007	1.09	0.0	0.07	15.10	0.02	2.091	8.09	1.84	5.9	94.1	0.0	-2.75	0.63	0.75	2.49	4.1	0.003	0.77	0.0	0.05	15.63	0.00	2.518	10.11	3.18	3.4	96.6	0.0	-0.20	1.36	0.67	0.80	2.25	14465	1755	14	0	18	0	0	logfile
✔	9iVR	60933	2025-05-20	2024-07-24	2.8	3.57	2.94	3.3	0.005	0.92	1.0	0.06	16.13	0.00	2.198	12.12	1.53	5.2	94.8	0.0	1.18	0.77	0.79	3.11	3.3	0.005	0.91	0.0	0.05	17.52	0.00	2.351	14.93	3.94	4.5	95.4	0.0	1.43	0.89	0.78	0.81	3.38	19758	2460	24	0	0	0	0	logfile
✔	9iVS	60934	2025-05-20	2024-07-24	2.97	3.77	3.06	3.5	0.006	0.96	2.0	0.06	16.30	0.00	2.156	18.91	3.01	6.1	93.9	0.0	0.63	0.82	0.81	2.62	3.5	0.004	0.79	0.0	0.05	17.33	0.00	2.405	13.75	3.85	4.5	95.5	0.0	1.17	0.93	0.82	0.81	2.56	19758	2460	24	0	0	0	0	logfile
✔	9CT3	45897	2025-05-13	2024-07-24	3.09	3.28	3.11	3.3	0.006	0.76	0.0	0.04	14.49	0.00	2.209	7.81	0.00	1.7	98.3	0.0	2.20	0.57	0.83	3.35	3.3	0.003	0.50	0.0	0.04	16.06	0.00	2.619	6.58	1.31	1.7	98.3	0.0	2.46	0.77	0.57	0.83	3.04	10138	1266	8	0	6	0	0	logfile
✔	9iVQ	60932	2025-05-20	2024-07-24	2.66	3.45	2.72	3.2	0.006	0.89	1.0	0.06	15.70	0.00	2.182	10.55	2.23	5.4	94.6	0.0	1.10	0.79	0.87	4.06	3.2	0.004	0.75	0.0	0.05	17.08	0.00	2.433	9.86	4.17	4.5	95.5	0.0	1.66	0.47	0.78	0.87	3.92	19758	2460	24	0	0	0	0	logfile
✔	9iVK	60929	2025-05-10	2024-07-23	2.74	3.03	2.77	3.0	0.006	0.87	0.0	0.06	14.94	0.00	2.231	9.92	0.69	2.0	98.0	0.0	1.92	0.59	0.74	2.64	3.0	0.003	0.57	0.0	0.04	17.10	0.00	2.533	5.64	1.83	1.8	98.2	0.0	2.77	1.25	0.61	0.79	2.48	4077	507	4	0	1	0	0	logfile
✔	9iVG	60927	2025-05-12	2024-07-23	3.0	3.73	3.06	3.5	0.003	0.56	0.0	0.04	18.21	0.00	2.127	7.87	3.98	5.1	94.7	0.2	0.58	0.75	0.87	2.24	3.5	0.003	0.73	0.0	0.04	18.08	0.00	2.438	7.39	2.79	5.4	94.4	0.2	0.77	0.69	0.67	0.80	2.27	9325	1170	6	0	0	0	0	logfile
✔	9G8B	51127	2025-05-18	2024-07-23	3.5	3.76	3.53	3.7	0.018	1.49	0.0	0.08	8.25	0.01	2.304	3.20	0.00	0.3	99.7	0.0	1.59	0.76	0.83	3.48	3.7	0.006	1.20	5.0	0.05	11.72	0.01	2.254	3.11	3.39	2.1	97.9	0.0	0.67	1.21	0.76	0.86	3.72	17346	2415	7	0	0	0	0	logfile
✔	9iVD	60925	2025-05-12	2024-07-23	3.55	4.42	3.48	4.1	0.004	0.72	0.0	0.05	16.74	0.01	2.128	8.14	0.23	11.1	88.4	0.4	-3.72	0.88	0.85	2.89	4.1	0.003	0.65	0.0	0.05	17.08	0.00	2.503	5.37	2.89	11.7	88.0	0.4	-2.87	0.91	0.88	0.84	2.76	8628	1160	3	0	0	0	0	logfile
✔	9iUQ	60912	2025-05-10	2024-07-22	3.3	3.52	3.23	3.5	0.006	0.84	2.0	0.05	18.19	0.01	2.253	6.40	0.72	3.2	96.8	0.0	0.27	0.66	0.83	2.01	3.5	0.003	0.54	0.0	0.04	18.40	0.00	2.502	6.32	3.77	3.1	96.9	0.0	1.09	0.95	0.66	0.86	1.77	6399	784	3	0	2	0	0	logfile
✔	9iUU	60914	2025-05-10	2024-07-22	3.29	3.45	3.35	3.5	0.006	0.86	1.0	0.05	16.62	0.01	2.254	9.61	0.86	4.6	95.4	0.0	-0.39	0.67	0.85	2.48	3.5	0.003	0.55	0.0	0.04	16.47	0.00	2.448	6.46	2.73	3.3	96.7	0.0	0.50	0.88	0.65	0.84	2.23	6513	791	4	0	8	0	0	logfile
✔	9iUZ	60916	2025-05-11	2024-07-22	3.19	3.81	3.33	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.63	0.0	0.04	18.23	0.00	2.488	6.13	2.77	3.7	96.3	0.0	1.35	0.93	0.76	0.83	1.39	8349	1061	5	0	2	0	0	logfile
✔	9iV2	60918	2025-05-10	2024-07-22	3.53	4.14	3.44	3.9	0.002	0.54	0.0	0.04	17.47	0.00	2.186	8.42	0.00	5.1	94.9	0.0	-0.13	0.71	0.84	0.91	3.9	0.005	0.61	0.0	0.04	17.64	0.00	2.442	8.34	5.04	6.7	93.3	0.0	-0.53	0.28	0.71	0.85	1.10	6732	892	5	0	1	0	0	logfile
✔	9iV1	60917	2025-05-11	2024-07-22	2.98	2.31	3.06	2.1	0.007	0.89	1.0	0.05	16.44	0.00	2.181	13.35	4.62	7.5	91.7	0.8	-1.29	0.79	0.80	2.60	2.1	0.004	0.72	0.0	0.04	16.20	0.00	2.370	8.90	3.32	8.0	91.9	0.1	-0.72	0.39	0.79	0.80	2.31	8284	1109	6	0	1	0	0	logfile
✔	9iUP	60911	2025-05-10	2024-07-22	3.3	3.49	3.27	3.5	0.005	0.74	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.005	0.64	0.0	0.04	17.29	0.00	2.474	7.90	3.03	4.3	95.7	0.0	0.36	0.28	0.69	0.87	2.31	6420	787	3	0	2	0	0	logfile
✔	9CRA	45856	2025-05-13	2024-07-21	2.34	2.18	2.35	2.0	0.003	0.60	0.0	0.05	12.61	0.01	2.203	10.41	0.00	7.6	92.4	0.0	-0.84	0.82	0.82	3.02	1.9	0.005	0.69	0.0	0.05	15.53	0.01	2.484	7.41	3.67	7.3	92.7	0.0	-0.64	0.37	0.83	0.83	2.33	9842	1247	8	0	4	0	0	logfile
✔	9CR8	45854	2025-05-12	2024-07-21	3.8	3.66	3.65	3.7	0.003	0.49	0.0	0.04	12.79	0.00	2.219	7.50	0.22	6.6	93.4	0.0	0.48	0.63	0.77	1.73	3.7	0.003	0.59	0.0	0.04	15.67	0.00	2.521	7.84	3.37	6.2	93.7	0.1	0.80	0.48	0.65	0.77	1.11	8664	1087	2	0	15	0	0	logfile
✔	9CR4	45832	2025-05-12	2024-07-20	2.81	2.35	2.85	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.67	0.0	0.05	14.54	0.01	2.323	9.72	3.50	7.6	92.4	0.0	0.01	0.57	0.74	0.75	2.28	9099	1179	4	0	0	0	0	logfile
✔	9iTN	60872	2025-05-16	2024-07-20	3.48	4.09	3.57	3.8	0.011	0.91	0.0	0.05	18.09	0.01	2.213	13.97	0.78	4.7	95.3	0.1	-0.27	0.69	0.79	0.29	3.8	0.003	0.72	0.0	0.04	18.34	0.01	2.527	14.84	5.11	4.0	96.0	0.0	1.23	0.40	0.69	0.79	0.00	14103	1858	16	0	0	0	0	logfile
✔	9G79	51116	2025-05-11	2024-07-20	2.89	3.21	2.90	3.1	0.003	0.59	0.0	0.04	15.64	0.01	2.243	9.18	0.00	2.9	97.1	0.0	0.63	0.78	0.86	4.04	3.1	0.003	0.57	0.0	0.04	16.31	0.00	2.500	7.70	2.66	2.6	97.4	0.0	0.69	0.82	0.77	0.86	3.38	7232	898	2	0	0	0	0	logfile

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