Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CAK	45394	2025-05-10	2024-06-17	3.01	2.30	3.04	2.1	0.005	0.62	0.0	0.04	15.87	0.03	2.010	7.48	0.00	4.8	95.2	0.0	-0.27	0.79	0.80	3.23	2.0	0.003	0.57	0.0	0.04	17.64	0.00	2.192	6.35	2.25	4.0	96.0	0.0	0.48	0.91	0.79	0.82	2.67	6268	773	5	10	2	0	0	logfile
✔	9CAJ	45393	2025-05-10	2024-06-17	3.51	2.46	3.38	2.2	0.004	0.66	0.0	0.04	15.92	0.01	2.088	12.57	0.45	4.8	95.2	0.0	-0.25	0.77	0.76	2.72	2.2	0.004	0.64	0.0	0.04	17.49	0.00	2.077	7.66	2.99	4.8	95.2	0.0	-0.20	0.40	0.77	0.77	2.21	6245	773	4	9	1	0	0	logfile
✔	8ZY1	60552	2025-05-24	2024-06-16	3.1	2.59	3.05	3.1	0.003	0.62	0.0	0.05	16.06	0.00	2.206	3.38	3.65	3.3	96.7	0.0	-1.60	0.73	0.85	2.54	3.1	0.003	0.58	0.0	0.04	15.80	0.00	2.486	3.46	4.44	3.3	96.7	0.0	-0.75	0.31	0.72	0.85	2.61	26025	3228	15	0	66	0	0	logfile
✔	9CA1	45379	2025-05-10	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.56	0.00	2.102	5.55	3.45	4.0	96.0	0.0	0.28	0.31	0.78	0.82	1.66	6265	773	5	10	2	0	0	logfile
✔	9C9Y	45376	2025-05-10	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	2.3	0.003	0.60	0.0	0.04	18.31	0.00	2.126	4.61	2.40	3.8	96.2	0.0	0.28	0.92	0.78	0.81	1.78	6225	773	4	8	2	0	0	logfile
✔	9CA4	45380	2025-05-10	2024-06-16	3.01	2.50	3.43	2.2	0.005	0.87	1.0	0.04	14.82	0.01	2.091	6.79	0.00	5.2	94.6	0.1	-0.38	0.76	0.79	2.74	2.2	0.004	0.64	0.0	0.04	17.07	0.00	2.128	6.47	1.95	5.0	95.0	0.0	0.11	0.93	0.78	0.81	1.89	6230	773	5	8	2	0	0	logfile
✔	9CA0	45378	2025-05-10	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.42	0.00	2.535	5.87	2.85	4.0	96.0	0.0	-0.51	0.35	0.79	0.81	1.55	6265	773	5	10	1	0	0	logfile
✔	9C9W	45374	2025-05-16	2024-06-16	4.25	3.29	4.36	2.2	0.005	0.80	0.0	0.04	19.22	0.01	2.070	19.12	0.15	9.6	90.2	0.2	-1.54	0.72	0.69	—	2.2	0.004	0.81	0.0	0.05	19.24	0.01	2.268	15.61	0.07	9.1	90.9	0.1	-1.42	1.45	0.73	0.72	—	13761	1546	8	80	1	0	0	logfile
✔	8ZY3	60554	2025-05-25	2024-06-16	3.3	3.49	3.24	3.3	0.005	0.80	0.0	0.06	13.58	0.00	2.262	4.92	0.00	5.0	95.0	0.0	-1.90	0.87	0.87	3.06	3.3	0.005	0.66	0.0	0.05	13.95	0.00	2.550	5.37	1.10	4.7	95.3	0.0	-0.65	0.34	0.89	0.90	2.90	26295	3270	12	0	60	0	0	logfile
✔	8ZY5	60556	2025-05-23	2024-06-16	3.8	3.56	3.78	3.6	0.005	0.97	0.0	0.06	14.40	0.01	2.283	5.19	0.23	6.7	93.2	0.2	-2.39	0.72	0.78	2.46	3.6	0.003	0.68	0.0	0.05	14.90	0.00	2.404	7.47	2.88	6.7	93.3	0.0	-1.26	0.41	0.73	0.80	2.47	24450	3030	15	0	63	0	0	logfile
✔	8ZY2	60553	2025-05-25	2024-06-16	2.9	3.71	2.92	3.3	0.006	0.79	2.0	0.05	14.21	0.01	2.276	3.26	0.17	3.4	96.6	0.0	-0.77	0.89	0.88	3.57	3.3	0.002	0.56	0.0	0.04	14.21	0.00	2.480	3.37	0.97	2.7	97.3	0.0	0.14	0.26	0.89	0.87	3.44	27099	3309	27	0	81	0	0	logfile
✔	8ZYA	60560	2025-05-11	2024-06-16	2.5	3.15	2.97	3.1	0.004	0.75	0.0	0.05	14.03	0.01	2.290	4.34	0.13	4.5	95.4	0.1	-1.47	0.58	0.75	3.06	3.1	0.002	0.56	0.0	0.04	16.05	0.00	2.572	5.88	1.90	3.4	96.6	0.0	-0.04	1.15	0.54	0.73	2.30	7306	884	6	0	8	0	0	logfile
✔	8ZY0	60551	2025-05-25	2024-06-16	3.0	3.09	2.87	3.1	0.005	0.76	0.0	0.05	13.97	0.01	2.240	3.50	0.07	4.6	95.4	0.0	-1.75	0.79	0.84	3.38	3.1	0.003	0.64	0.0	0.04	14.63	0.00	2.450	4.74	2.24	3.7	96.3	0.0	-0.99	1.17	0.82	0.88	3.10	26611	3276	12	0	73	0	0	logfile
✔	8ZY7	60558	2025-05-24	2024-06-16	3.45	3.67	3.43	3.6	0.003	0.69	0.0	0.05	15.43	0.00	2.267	2.88	3.66	3.7	96.3	0.0	-1.90	0.82	0.86	1.95	3.6	0.002	0.57	0.0	0.05	15.47	0.00	2.431	3.02	3.94	3.5	96.5	0.0	-0.86	0.23	0.82	0.87	1.81	25890	3195	24	0	69	0	0	logfile
✔	8ZY4	60555	2025-05-25	2024-06-16	2.53	3.34	2.56	3.0	0.004	0.69	0.0	0.05	15.75	0.01	2.222	3.18	2.47	4.1	95.9	0.0	-1.62	0.86	0.87	3.28	3.0	0.004	0.63	0.0	0.05	15.55	0.00	2.443	3.64	2.58	5.0	95.0	0.0	-0.72	0.31	0.87	0.88	3.22	26181	3219	21	0	75	0	0	logfile
✔	8ZY9	60559	2025-05-16	2024-06-16	2.7	3.68	2.75	3.2	0.004	0.74	0.0	0.05	13.65	0.01	2.252	3.43	0.00	4.6	95.4	0.1	-1.83	0.87	0.87	2.96	3.3	0.003	0.61	0.0	0.04	14.83	0.00	2.544	4.98	0.96	3.6	96.4	0.0	0.66	1.10	0.86	0.87	2.75	14481	1749	12	0	16	0	0	logfile
✔	9FQ0	50642	2025-05-29	2024-06-14	4.67	7.96	4.69	5.9	0.005	1.10	1.0	0.13	20.50	0.01	2.021	31.09	2.23	4.5	94.9	0.6	-0.08	0.25	0.45	—	5.2	0.004	0.81	0.0	0.04	20.08	0.01	1.966	24.69	0.04	5.9	94.0	0.1	-1.11	1.45	0.29	0.64	—	31676	2961	17	356	1	0	0	logfile
✔	9FPZ	50641	2025-05-27	2024-06-14	2.69	4.22	2.88	3.3	0.003	0.74	0.0	0.13	20.32	0.00	1.268	14.64	1.41	3.2	96.7	0.1	0.38	0.29	0.80	2.02	3.3	0.004	0.79	0.0	0.04	20.54	0.00	1.252	12.26	2.43	3.4	96.6	0.0	0.26	0.51	0.30	0.87	1.99	29394	2666	15	358	3	0	0	logfile
✔	8ZXN	60545	2025-05-09	2024-06-14	3.06	3.28	2.99	3.3	0.009	1.27	0.0	0.08	12.40	0.01	2.516	0.13	0.77	1.5	98.5	0.0	-3.05	0.49	0.77	3.38	3.3	0.003	0.60	0.0	0.04	14.75	0.00	2.518	2.83	2.06	2.3	97.7	0.0	2.55	0.48	0.54	0.79	2.55	3653	471	2	0	2	0	0	logfile
✔	8ZXP	60548	2025-05-14	2024-06-14	3.09	3.32	3.13	3.5	0.005	0.98	0.0	0.05	16.93	0.01	2.297	4.76	0.41	5.2	94.8	0.0	-1.54	0.59	0.80	2.09	3.5	0.003	0.61	0.0	0.04	16.90	0.00	2.603	8.14	3.69	3.7	96.3	0.0	2.01	0.34	0.59	0.80	1.93	11586	1482	6	0	3	0	0	logfile

• ← previous
• Page 39 of 642
• next →