Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BHM	44550	2025-05-13	2024-04-21	2.9	3.15	2.84	3.1	0.008	0.65	0.0	0.04	14.74	0.00	2.165	10.17	0.13	2.9	97.1	0.0	-0.56	0.50	0.68	1.61	3.1	0.004	0.68	0.0	0.04	16.55	0.00	2.464	12.21	2.58	3.6	96.4	0.0	-0.27	1.01	0.57	0.74	1.66	7150	890	5	0	1	0	0	logfile
✔	8Z80	39834	2025-05-09	2024-04-21	3.7	3.78	3.70	3.7	0.004	0.74	0.0	0.04	13.05	0.01	2.251	10.35	0.00	5.5	94.5	0.0	0.64	0.35	0.55	0.99	3.7	0.003	0.69	0.0	0.04	15.84	0.00	2.570	10.71	2.29	4.2	95.8	0.0	0.69	1.07	0.35	0.57	0.99	2828	389	2	0	1	0	0	logfile
✔	8Z7Z	39833	2025-05-09	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.004	0.66	0.0	0.04	15.62	0.01	2.544	12.50	1.91	3.4	96.6	0.0	1.43	1.11	0.47	0.67	-0.21	2834	389	2	0	1	0	0	logfile
✔	9BHL	44549	2025-05-19	2024-04-21	2.8	3.00	2.77	3.2	0.003	0.61	0.0	0.04	14.81	0.00	1.982	8.77	0.12	3.8	96.2	0.0	-0.22	0.33	0.40	1.46	3.1	0.003	0.63	0.0	0.04	16.22	0.00	2.280	7.79	3.09	5.0	94.9	0.1	-0.70	1.91	0.51	0.64	1.42	15287	969	4	0	0	0	7571	logfile
✔	8Z7R	39825	2025-05-09	2024-04-21	3.15	3.31	3.09	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.68	0.0	0.04	16.63	0.00	2.595	9.96	4.20	2.9	97.1	0.0	1.64	0.41	0.57	0.81	1.81	3098	387	1	0	0	0	0	logfile
✔	8Z81	39835	2025-05-27	2024-04-21	2.2	1.99	2.22	2.2	0.026	2.32	0.0	0.06	25.81	0.03	2.091	16.07	1.05	1.4	98.6	0.0	3.46	0.75	0.85	5.82	2.2	0.007	1.05	0.0	0.05	21.00	0.01	2.393	16.52	0.43	1.2	98.8	0.0	3.21	0.90	0.75	0.86	5.35	29349	2538	108	0	171	0	0	logfile
✔	8Z83	39837	2025-05-26	2024-04-21	2.6	2.37	2.64	2.5	0.022	2.02	0.0	0.06	23.55	0.02	1.828	13.76	2.32	2.4	97.6	0.0	1.75	0.71	0.86	5.33	2.5	0.005	0.76	0.0	0.04	19.08	0.00	1.948	12.36	1.91	2.4	97.6	0.0	1.96	0.89	0.72	0.87	4.72	27998	2677	74	0	132	5	0	logfile
✔	8Z7T	39827	2025-05-09	2024-04-21	3.39	3.55	3.20	3.6	0.003	0.62	0.0	0.04	16.89	0.01	2.208	10.57	0.60	3.4	96.6	0.0	0.43	0.56	0.82	1.51	3.6	0.003	0.67	0.0	0.04	17.16	0.00	2.582	8.17	2.70	1.3	98.7	0.0	1.78	0.43	0.57	0.82	1.68	3110	387	2	0	1	0	0	logfile
✔	8Z7U	39828	2025-05-09	2024-04-21	3.1	3.31	3.03	3.3	0.014	0.90	1.0	0.05	19.01	0.01	2.218	15.72	0.90	3.1	96.9	0.0	-0.32	0.58	0.82	2.48	3.3	0.004	0.66	0.0	0.04	17.48	0.00	2.592	8.26	3.00	1.3	98.7	0.0	1.95	1.05	0.54	0.80	3.05	3135	387	2	0	1	0	0	logfile
✔	8Z85	39838	2025-05-13	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.005	0.60	0.0	0.04	15.49	0.00	2.471	5.74	1.69	2.6	97.4	0.0	0.61	1.52	0.80	0.88	4.41	10467	1256	5	18	0	0	0	logfile
✔	9BHG	44546	2025-05-13	2024-04-20	3.25	3.53	3.27	3.5	0.007	0.79	0.0	0.05	12.73	0.00	2.213	9.53	0.00	3.4	96.6	0.0	-0.97	0.74	0.81	2.30	3.5	0.005	0.60	0.0	0.04	14.90	0.00	2.449	9.06	2.01	4.0	96.0	0.0	-0.59	1.05	0.76	0.85	3.00	10860	1320	8	0	4	0	0	logfile
✔	8Z7H	39814	2025-05-21	2024-04-20	3.56	3.65	3.45	3.6	0.009	0.86	0.0	0.05	12.40	0.00	2.077	10.81	0.00	4.0	96.0	0.0	-0.06	0.78	0.80	2.68	3.6	0.003	0.61	0.0	0.04	15.39	0.00	2.552	9.88	1.97	2.8	97.2	0.0	0.34	1.18	0.79	0.80	2.48	21720	2640	16	0	8	0	0	logfile
✔	8Z7L	39819	2025-05-10	2024-04-20	3.42	2.85	3.34	1.3	0.002	0.46	0.0	0.04	8.76	0.00	2.324	6.07	4.12	4.9	95.1	0.0	-2.92	0.86	0.86	3.47	1.4	0.005	0.74	0.0	0.05	13.44	0.00	2.136	7.64	5.05	5.5	94.5	0.0	-1.27	0.67	0.88	0.90	3.29	6774	843	9	0	12	0	0	logfile
✔	9F1R	50135	2025-05-11	2024-04-20	3.67	3.93	3.68	3.9	0.004	0.67	0.0	0.05	17.91	0.01	2.035	12.55	0.24	4.6	95.4	0.0	-0.50	0.69	0.80	1.97	3.9	0.003	0.61	0.0	0.04	16.81	0.00	2.520	8.97	4.39	4.3	95.7	0.0	0.24	0.35	0.70	0.81	1.90	7870	960	5	0	9	0	0	logfile
✔	8Z7N	39820	2025-05-18	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.38	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.003	0.94	0.0	0.05	18.49	0.01	2.409	18.12	4.65	12.5	87.5	0.0	-3.18	1.86	0.61	0.49	0.44	16641	2094	15	0	18	0	0	logfile
✔	8Z7J	39816	2025-05-14	2024-04-20	3.12	2.21	3.19	1.9	0.003	0.66	0.0	0.04	15.97	0.00	2.158	16.06	0.00	4.2	95.7	0.1	-0.33	0.73	0.73	2.27	2.0	0.003	0.64	0.0	0.04	16.79	0.00	2.392	11.46	3.55	4.5	95.5	0.0	-0.05	1.10	0.75	0.75	2.05	10089	1293	6	0	0	0	0	logfile
✔	9BGY	44526	2025-05-09	2024-04-19	3.0	2.40	3.00	3.0	0.003	0.50	0.0	0.04	14.21	0.00	2.152	6.28	0.32	2.1	97.9	0.0	2.93	0.71	0.83	2.27	3.0	0.003	0.65	0.0	0.04	16.56	0.00	2.592	7.11	2.23	1.8	98.2	0.0	2.87	0.51	0.76	0.86	2.91	2916	389	1	0	0	0	0	logfile
✔	9BHE	44542	2025-05-13	2024-04-19	3.8	4.96	3.90	4.1	0.013	1.43	0.0	0.08	15.88	0.01	2.197	14.89	0.28	3.6	96.4	0.0	-0.01	0.83	0.85	1.50	4.2	0.003	0.72	0.0	0.04	15.40	0.00	2.526	11.68	1.69	4.6	95.4	0.0	1.05	0.92	0.82	0.86	0.98	9878	1246	8	4	0	0	0	logfile
✔	9BHB	44539	2025-05-09	2024-04-19	3.1	3.25	2.99	3.3	0.006	0.82	0.0	0.05	13.80	0.01	2.274	5.99	0.35	6.6	93.4	0.0	-2.11	0.60	0.83	4.31	3.3	0.004	0.57	0.0	0.04	15.07	0.00	2.542	7.14	3.17	5.4	94.6	0.0	0.65	0.81	0.59	0.83	4.13	2626	328	3	0	0	0	0	logfile
✔	9BHD	44541	2025-05-21	2024-04-19	3.38	3.65	3.45	3.6	0.009	0.86	0.0	0.05	12.40	0.00	2.077	10.81	0.00	4.0	96.0	0.0	-0.06	0.78	0.79	2.68	3.6	0.004	0.83	2.0	0.04	15.33	0.01	2.207	13.13	2.43	3.5	96.5	0.0	0.24	1.18	0.80	0.84	2.64	21720	2640	16	0	8	0	0	logfile

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