Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BBC	44417	2025-05-11	2024-04-05	3.3	4.25	3.36	3.7	0.003	0.97	0.0	0.05	15.19	0.00	2.206	13.57	0.56	3.7	96.2	0.1	0.51	0.81	0.82	2.28	3.8	0.004	0.93	0.0	0.05	15.52	0.00	2.450	12.12	2.47	4.2	95.8	0.0	0.14	1.20	0.82	0.83	2.05	8440	1052	16	0	20	0	0	logfile
✔	9EWX	50025	2025-05-23	2024-04-05	3.17	2.84	3.08	3.1	0.002	0.42	0.0	0.04	17.57	0.00	2.318	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.002	0.49	0.0	0.05	16.67	0.00	2.549	5.54	3.77	1.3	98.7	0.0	2.77	0.49	0.68	0.89	1.90	23989	3289	23	0	0	0	0	logfile
✔	9BAP	44410	2025-05-10	2024-04-04	2.88	3.32	2.89	3.3	0.005	0.73	0.0	0.04	15.77	0.00	2.159	9.48	0.84	3.3	96.7	0.0	-0.35	0.61	0.67	2.09	3.3	0.003	0.64	0.0	0.04	16.23	0.00	2.537	7.07	4.53	2.9	97.1	0.0	-0.07	0.32	0.62	0.68	1.65	6535	886	2	0	2	0	0	logfile
✔	9EWQ	50022	2025-05-14	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.79	1.0	0.05	15.07	0.00	2.360	3.93	1.88	3.4	96.6	0.0	-0.93	0.22	0.76	0.88	3.46	11904	1540	4	0	0	0	0	logfile
✔	9BAo	44408	2025-05-18	2024-04-04	3.2	3.66	3.29	3.6	0.003	0.60	0.0	0.04	14.82	0.00	2.187	4.15	0.10	5.8	94.2	0.0	-0.53	0.61	0.82	3.02	3.6	0.002	0.51	0.0	0.04	15.41	0.00	2.324	1.99	2.14	5.4	94.6	0.0	-0.32	0.56	0.61	0.84	2.83	17594	1164	8	0	0	0	8725	logfile
✔	8YYW	39681	2025-05-12	2024-04-04	3.16	3.46	3.22	3.4	0.004	0.62	0.0	0.04	17.19	0.00	2.201	7.65	0.50	5.4	94.6	0.0	0.16	0.66	0.88	3.04	3.4	0.007	0.70	0.0	0.05	17.67	0.00	2.172	4.94	4.59	6.0	94.0	0.0	0.14	0.89	0.65	0.89	3.10	9068	1153	6	0	2	0	0	logfile
✔	9EWV	50023	2025-05-13	2024-04-04	2.9	2.86	2.79	3.3	0.009	0.92	0.0	0.06	15.09	0.00	2.535	7.25	0.00	5.1	94.9	0.0	-3.39	0.39	0.65	2.21	3.2	0.004	0.69	0.0	0.05	16.21	0.00	2.382	19.22	1.45	14.0	86.0	0.0	-4.23	1.49	0.40	0.67	3.04	11040	768	12	0	0	0	5676	logfile
✔	8YYT	39678	2025-05-16	2024-04-04	3.6	4.49	3.70	3.6	0.003	0.68	0.0	0.04	16.57	0.01	2.195	14.79	0.06	5.2	94.8	0.0	-1.63	0.82	0.71	0.74	3.6	0.003	0.67	0.0	0.04	17.01	0.00	2.509	10.40	2.58	4.8	95.2	0.0	-1.00	0.48	0.84	0.74	0.98	14147	1757	6	0	0	0	0	logfile
✔	9BAN	44407	2025-05-18	2024-04-04	3.39	3.84	3.47	3.8	0.004	0.61	0.0	0.04	14.57	0.00	2.210	4.17	0.00	5.4	94.6	0.0	-0.51	0.67	0.81	3.02	3.8	0.002	0.52	0.0	0.04	15.19	0.00	2.235	2.52	1.85	5.0	95.0	0.0	-0.19	0.60	0.71	0.87	3.02	17505	1162	8	0	0	0	8684	logfile
✔	8YYL	39675	2025-05-12	2024-04-04	4.01	4.47	3.93	4.0	0.004	0.70	0.0	0.05	15.50	0.01	2.185	12.77	1.10	3.5	96.5	0.0	-0.66	0.80	0.65	—	4.0	0.003	0.61	0.0	0.04	13.56	0.00	2.529	10.56	0.10	3.6	96.4	0.0	-0.57	1.51	0.84	0.75	—	8981	1111	3	0	0	0	0	logfile
✔	9B9R	44389	2025-05-10	2024-04-03	3.7	4.67	3.12	4.1	0.002	0.68	0.0	0.04	11.04	0.00	2.150	2.60	0.00	0.9	99.1	0.0	0.53	0.69	0.69	0.82	4.2	0.003	0.69	0.0	0.04	15.75	0.00	2.278	8.52	1.56	1.6	98.4	0.0	1.42	1.43	0.71	0.76	1.47	6928	444	4	0	0	0	3436	logfile
✔	9BA5	44396	2025-05-12	2024-04-03	3.51	2.38	3.57	3.6	0.011	1.32	2.0	0.07	12.94	0.01	2.389	2.35	0.00	5.3	94.7	0.0	-1.42	0.61	0.60	1.98	3.6	0.004	0.66	0.0	0.04	14.51	0.00	2.585	8.40	1.56	3.0	97.0	0.0	-0.31	1.15	0.65	0.62	1.52	9012	1146	4	0	10	0	0	logfile
✔	8YY0	39662	2025-05-16	2024-04-03	3.6	4.03	3.54	2.6	0.004	0.85	0.0	0.05	5.98	0.01	2.470	1.56	0.00	5.8	94.0	0.2	1.32	0.67	0.72	—	2.5	0.003	0.56	0.0	0.04	5.80	0.00	2.415	0.71	0.00	7.5	92.5	0.0	1.42	0.21	0.67	0.72	—	14117	1845	14	0	0	0	5020	logfile
✔	9BA4	44395	2025-05-17	2024-04-03	3.54	2.59	3.59	3.7	0.010	1.30	2.0	0.07	12.63	0.01	2.392	1.86	0.00	5.8	94.2	0.0	-1.80	0.66	0.68	1.73	3.7	0.003	0.65	0.0	0.04	13.84	0.00	2.493	7.32	1.05	3.2	96.8	0.0	-0.28	0.47	0.66	0.65	2.18	15204	1940	10	0	16	0	0	logfile
✔	8YXZ	39661	2025-05-15	2024-04-03	3.0	3.42	3.20	3.4	0.011	1.66	2.0	0.09	12.99	0.01	2.396	0.58	0.08	2.5	97.5	0.1	-0.44	0.73	0.85	2.48	3.3	0.004	0.65	0.0	0.04	15.16	0.00	2.497	5.72	1.57	2.6	97.4	0.0	2.36	0.59	0.75	0.88	1.27	13478	1845	14	0	0	0	0	logfile
✔	9BAA	44402	2025-05-11	2024-04-03	3.39	3.77	3.54	3.7	0.004	0.63	0.0	0.04	14.98	0.00	2.231	9.22	0.12	8.1	91.7	0.2	1.06	0.63	0.81	1.62	3.7	0.004	0.96	1.0	0.04	16.68	0.00	2.256	10.28	2.47	8.3	91.4	0.3	1.76	0.34	0.61	0.81	1.23	7771	994	2	0	0	0	0	logfile
✔	8YY1	39663	2025-05-12	2024-04-03	3.6	3.97	3.60	3.4	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.60	0.0	0.04	4.46	0.01	2.593	1.77	0.00	5.3	94.7	0.0	2.41	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	9B9J	44386	2025-05-18	2024-04-02	2.6	3.11	2.64	3.0	0.005	0.74	0.0	0.05	19.52	0.00	2.049	2.70	0.34	2.9	97.0	0.1	0.15	0.70	0.77	4.32	3.0	0.003	0.58	0.0	0.04	14.65	0.00	2.037	2.40	0.90	2.6	97.3	0.1	0.26	0.61	0.73	0.81	3.90	16334	1055	16	0	39	0	7817	logfile
✔	8YX8	39650	2025-05-15	2024-04-02	2.8	3.36	2.85	3.2	0.007	0.58	0.0	0.04	12.02	0.00	2.281	8.00	0.00	0.0	100.0	0.0	2.24	0.62	0.82	3.60	3.2	0.005	0.84	1.0	0.05	15.32	0.00	2.381	9.71	2.17	1.5	98.5	0.0	1.68	1.06	0.64	0.85	3.69	13070	1620	15	0	15	0	0	logfile
✔	8YX6	39648	2025-05-15	2024-04-02	2.9	3.57	2.95	3.4	0.007	0.55	0.0	0.04	8.16	0.00	1.968	7.32	0.00	0.3	99.7	0.0	2.41	0.64	0.83	4.03	3.4	0.003	0.57	0.0	0.04	13.41	0.00	2.024	7.70	1.40	1.4	98.6	0.0	2.07	0.52	0.57	0.80	3.51	13080	1620	15	0	25	0	0	logfile

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